Rmagpie

Package: Rmagpie
Version: 1.28.0
Title: MicroArray Gene-expression-based Program In Error rate
estimation
Author: Camille Maumet <Rmagpie@gmail.com>, with
contributions from C. Ambroise
J. Zhu
Maintainer: Camille Maumet <Rmagpie@gmail.com>
Depends: R (>= 2.6.1), Biobase (>= 2.5.5)
Imports: Biobase (>= 2.5.5), e1071, graphics, grDevices, kernlab,
methods, pamr, stats, utils
Suggests: xtable
Description: Microarray Classification is designed for both biologists and statisticians.
It offers the ability to train a classifier on a labelled microarray dataset and to then use
that classifier to predict the class of new observations. A range of modern classifiers are available, including
support vector machines (SVMs), nearest shrunken centroids (NSCs)... Advanced methods are provided to estimate
the predictive error rate and to report the subset of genes which appear essential in discriminating between classes.
License: GPL (>= 3)
LazyLoad: yes
URL: http://www.bioconductor.org/
biocViews: Microarray, Classification
collate: AllClasses.R AllGenerics.R AllInitialize.R
classifyNewSamples.R convertDataFile.R assessment-accessors.R
featureSelectionOptions-accessors.R finalClassifier-accessors.R
geneSubsets-accessors.R initialize-methods.R loadData-methods.R
non_linear_svm.R one_layer_ext_CV.R rateGenes.R
result2LayerCV-accessors.R resultRepeated1LayerCV-accessors.R
rfe_zhu.R runOneLayerExtCV-methods.R runTwoLayerExtCV-methods.R
setValidity-methods.R show-methods.R thresholds-accessors.R
tool_case.R two_layer_ext_CV.R typeValidity.R user_interface.R
NeedsCompilation: no
Packaged: 2016-05-04 03:13:42 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Rmagpie' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Rmagpie'
    finding HTML links ... done
    classifyNewSamples-methods              html  
    experiment-class                        html  
    featureSelectionOptions-class           html  
    finalClassifier-class                   html  
    findFinalClassifier-methods             html  
    geneSubsets-class                       html  
    getDataset-methods                      html  
    getFeatureSelectionOptions-methods      html  
    getFinalClassifier                      html  
    getResults-methods                      html  
    initialize-methods                      html  
    plotErrorsFoldTwoLayerCV-methods        html  
    plotErrorsRepeatedOneLayerCV            html  
    plotErrorsSummaryOneLayerCV-methods     html  
    rankedGenesImg-methods                  html  
    runOneLayerExtCV-methods                html  
    runTwoLayerExtCV-methods                html  
    setDataset-methods                      html  
    setFeatureSelectionOptions-methods      html  
    show-methods                            html  
    thresholds-class                        html  
    vV70genes                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Rmagpie)
Making 'packages.html' ... done