RnaSeqSampleSize

Package: RnaSeqSampleSize
Type: Package
Title: RnaSeqSampleSize
Version: 1.4.2
Date: 2015-04-12
Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr
Maintainer: Shilin Zhao <zhaoshilin@gmail.com>
Description: RnaSeqSampleSize package provides a sample size calculation method
based on negative binomial model and the exact test for assessing
differential expression analysis of RNA-seq data
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Depends: R (>= 2.10), RnaSeqSampleSizeData
Imports: biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2)
LinkingTo: Rcpp
VignetteBuilder: knitr
Suggests: BiocStyle, knitr
biocViews: ExperimentalDesign, Sequencing, RNASeq, GeneExpression,
DifferentialExpression
NeedsCompilation: yes
Packaged: 2016-05-16 05:10:50 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RnaSeqSampleSize' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RnaSeqSampleSize.c -o RnaSeqSampleSize.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c bd0.c -o bd0.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c cumsumBorder.cpp -o cumsumBorder.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c stirlerr.c -o stirlerr.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o RnaSeqSampleSize.so RcppExports.o RnaSeqSampleSize.o bd0.o cumsumBorder.o stirlerr.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/RnaSeqSampleSize/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RnaSeqSampleSize'
    finding HTML links ... done
    convertIdOneToOne                       html  
    est_count_dispersion                    html  
    est_power                               html  
    est_power_curve                         html  
    est_power_distribution                  html  
    optimize_parameter                      html  
    plot_power_curve                        html  
    sample_size                             html  
    sample_size_distribution                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RnaSeqSampleSize)
Making 'packages.html' ... done