Rvcg

Package: Rvcg
Type: Package
Title: Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Version: 0.13.1.2
Date: 2016-01-21
Author: Stefan Schlager; the authors of VCGLIB for the included version of the
code
Maintainer: Stefan Schlager <zarquon42@gmail.com>
Description: Operations on triangular meshes based on 'VCGLIB'. This package
integrates nicely with the R-package 'rgl' to render the meshes processed by
'Rvcg'. The Visualization and Computer Graphics Library (VCG for short) is
an open source portable C++ templated library for manipulation, processing
and displaying with OpenGL of triangle and tetrahedral meshes. The library,
composed by more than 100k lines of code, is released under the GPL license,
and it is the base of most of the software tools of the Visual Computing Lab of
the Italian National Research Council Institute ISTI (http://vcg.isti.cnr.it),
like 'metro' and 'MeshLab'. The 'VCGLIB' source is pulled from trunk (svn://
svn.code.sf.net/p/vcg/code/trunk/vcglib) and patched to work with options
determined by the configure script as well as to work with the header files
included by 'RcppEigen'.
Depends: R (>= 3.0.0)
Imports: Rcpp, grDevices, stats, utils
Suggests: Morpho, rgl
LinkingTo: Rcpp, RcppEigen
License: GPL (>= 2) | file LICENSE
BugReports: https://github.com/zarquon42b/Rvcg/issues
Copyright: see files COPYRIGHTS for detailed information
LazyLoad: yes
Biarch: yes
URL: http://github.com/zarquon42b/Rvcg
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-01-21 14:19:35 UTC; schlager
Repository: CRAN
Date/Publication: 2016-01-21 16:44:01

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Rvcg' ...
** package 'Rvcg' successfully unpacked and MD5 sums checked
using C++ Compiler ...g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether g++ supports C++11 features by default... no
checking whether g++ supports C++11 features with -std=c++11... yes
checking for ISO C++ TR1 include files... yes
checking for inttypes.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c vcglib/wrap/ply/plylib.cpp -o vcglib/wrap/ply/plylib.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c checkListNames.cpp -o checkListNames.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c RallRead.cpp -o RallRead.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefImport.h:9,
                 from RallRead.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefImport.h:9,
                 from RallRead.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefImport.h:9,
                 from RallRead.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefImport.h:9,
                 from RallRead.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rborder.cpp -o Rborder.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rborder.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rborder.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rborder.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rborder.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rclean.cpp -o Rclean.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefTopo.h:9,
                 from Rclean.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefTopo.h:9,
                 from Rclean.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefTopo.h:9,
                 from Rclean.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefTopo.h:9,
                 from Rclean.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rclost.cpp -o Rclost.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rclost.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rclost.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rclost.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rclost.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rcurvature.cpp -o Rcurvature.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefCurvature.h:9,
                 from Rcurvature.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefCurvature.h:9,
                 from Rcurvature.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefCurvature.h:9,
                 from Rcurvature.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefCurvature.h:9,
                 from Rcurvature.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rexport.cpp -o Rexport.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefImport.h:9,
                 from Rexport.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefImport.h:9,
                 from Rexport.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefImport.h:9,
                 from Rexport.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefImport.h:9,
                 from Rexport.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c RgetEdge.cpp -o RgetEdge.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from RgetEdge.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from RgetEdge.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from RgetEdge.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from RgetEdge.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rintersect.cpp -o Rintersect.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rintersect.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rintersect.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rintersect.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rintersect.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Risolated.cpp -o Risolated.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefTopo.h:9,
                 from Risolated.cpp:6:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefTopo.h:9,
                 from Risolated.cpp:6:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefTopo.h:9,
                 from Risolated.cpp:6:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefTopo.h:9,
                 from Risolated.cpp:6:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rkdtree.cpp -o Rkdtree.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rkdtree.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rkdtree.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rkdtree.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rkdtree.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rmarch.cpp -o Rmarch.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rmarch.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rmarch.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rmarch.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rmarch.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rmeshres.cpp -o Rmeshres.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rmeshres.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rmeshres.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rmeshres.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rmeshres.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c ROneRing.cpp -o ROneRing.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefTopo.h:9,
                 from ROneRing.cpp:2:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefTopo.h:9,
                 from ROneRing.cpp:2:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedefTopo.h:9,
                 from ROneRing.cpp:2:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedefTopo.h:9,
                 from ROneRing.cpp:2:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rplatonic.cpp -o Rplatonic.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rplatonic.cpp:2:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rplatonic.cpp:2:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rplatonic.cpp:2:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rplatonic.cpp:2:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c RQEdecim.cpp -o RQEdecim.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from RQEdecim.cpp:11:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from RQEdecim.cpp:11:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from RQEdecim.cpp:11:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from RQEdecim.cpp:11:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rsample.cpp -o Rsample.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rsample.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rsample.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rsample.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rsample.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Rsmooth.cpp -o Rsmooth.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rsmooth.cpp:4:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rsmooth.cpp:4:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from Rsmooth.cpp:4:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from Rsmooth.cpp:4:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c Runiform_resample.cpp -o Runiform_resample.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from vcglib/vcg/complex/algorithms/clean.h:28,
                 from Runiform_resample.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from vcglib/vcg/complex/algorithms/clean.h:28,
                 from Runiform_resample.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from vcglib/vcg/complex/algorithms/clean.h:28,
                 from Runiform_resample.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from vcglib/vcg/complex/algorithms/clean.h:28,
                 from Runiform_resample.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c RupdateNormals.cpp -o RupdateNormals.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from RupdateNormals.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from RupdateNormals.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from RupdateNormals.cpp:1:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from RupdateNormals.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Ivcglib -I. -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -std=c++11 -fopenmp -fpic  -g -O2  -c RVFadj.cpp -o RVFadj.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from RVFadj.cpp:4:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from RVFadj.cpp:4:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from vcglib/vcg/math/matrix44.h:33,
                 from vcglib/vcg/space/box3.h:27,
                 from vcglib/vcg/complex/used_types.h:5,
                 from vcglib/vcg/complex/complex.h:42,
                 from typedef.h:9,
                 from RVFadj.cpp:4:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from vcglib/vcg/complex/complex.h:29,
                 from typedef.h:9,
                 from RVFadj.cpp:4:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Rvcg.so vcglib/wrap/ply/plylib.o checkListNames.o RallRead.o Rborder.o Rclean.o Rclost.o Rcurvature.o Rexport.o RgetEdge.o Rintersect.o Risolated.o Rkdtree.o Rmarch.o Rmeshres.o ROneRing.o Rplatonic.o RQEdecim.o Rsample.o Rsmooth.o Runiform_resample.o RupdateNormals.o RVFadj.o -fopenmp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/Rvcg/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Rvcg'
    finding HTML links ... done
    Rvcg-package                            html  
    dummyhead                               html  
    humface                                 html  
    meshintegrity                           html  
    setRays                                 html  
    vcgBary                                 html  
    vcgBorder                               html  
    vcgClean                                html  
    vcgClost                                html  
    vcgClostKD                              html  
    vcgCurve                                html  
    vcgGetEdge                              html  
    vcgImport                               html  
    vcgIsolated                             html  
    vcgIsosurface                           html  
    vcgKDtree                               html  
    vcgMeshres                              html  
    vcgNonBorderEdge                        html  
    vcgPlatonic                             html  
    vcgPlyRead                              html  
    vcgPlyWrite                             html  
    vcgQEdecim                              html  
    vcgRaySearch                            html  
    vcgSample                               html  
    vcgSmooth                               html  
    vcgStlWrite                             html  
    vcgUniformRemesh                        html  
    vcgUpdateNormals                        html  
    vcgVFadj                                html  
** building package indices
** testing if installed package can be loaded
* DONE (Rvcg)
Making 'packages.html' ... done