SNPassoc

Package: SNPassoc
Version: 1.9-2
Date: 2014-Apr-22
Depends: R (>= 3.0.0), haplo.stats, survival, mvtnorm, parallel
Title: SNPs-based whole genome association studies
Author: Juan R González, Lluís Armengol, Elisabet Guinó, Xavier Solé, and Víctor Moreno
Maintainer: Juan R González <jrgonzalez@creal.cat>
Description: This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated.
License: GPL (>= 2)
URL: http://www.creal.cat/jrgonzalez/software.htm
Encoding: latin1
Packaged: 2014-04-23 06:38:07 UTC; jrgonzalez
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-23 09:27:48

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'SNPassoc' ...
** package 'SNPassoc' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SNPassoc'
    finding HTML links ... done
    BonferroniSig                           html  
    GenomicControl                          html  
    HapMap                                  html  
    LD                                      html  
    SNPassoc-internal                       html  
    SNPs                                    html  
    TableNPer                               html  
    Tablemeanse                             html  
    WGassociation                           html  
    association                             html  
    getSignificantSNPs                      html  
    haplointeraction                        html  
    inheritance                             html  
    int                                     html  
    interactionPval                         html  
    intervals                               html  
    isMonomorphic                           html  
    makegeno                                html  
    maxstat                                 html  
    odds                                    html  
    permTest                                html  
    plotMissing                             html  
    plotWGassociation                       html  
    qqpval                                  html  
    scanWGassociation                       html  
    setupSNP                                html  
    snp                                     html  
    sortSNPs                                html  
    tableHWE                                html  
** building package indices
** testing if installed package can be loaded
* DONE (SNPassoc)
Making 'packages.html' ... done