SNPlocs.Hsapiens.dbSNP.20090506

Package: SNPlocs.Hsapiens.dbSNP.20090506
Title: SNP locations for Homo sapiens (dbSNP Build 130)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 130. The source data files used for this
package were created by NCBI on 5-6 May, 2009, and contain
SNPs mapped to reference genome NCBI Build 36.1, which is identical
to the hg18 genome from UCSC. Therefore, the SNPs in this
package can be "injected" in BSgenome.Hsapiens.UCSC.hg18 and they
will land at the correct location.
Version: 0.99.9
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
Depends: R (>= 2.10), IRanges, GenomicRanges, BSgenome (>= 1.25.6)
Imports: methods, utils, IRanges, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.19)
License: Artistic-2.0
organism: Homo sapiens
species: Human
provider: dbSNP
provider_version: 20090506
release_date: May 5, 2009
release_name: Build 130
reference_genome: NCBI Build 36.1
download_url:
ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/ASN1_flat/
download_date: NA
biocViews: AnnotationData, Genetics, Homo_sapiens
NeedsCompilation: no
Packaged: 2015-08-10 19:10:56 UTC; hpages

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'SNPlocs.Hsapiens.dbSNP.20090506' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SNPlocs.Hsapiens.dbSNP.20090506'
    finding HTML links ... done
    getSNPlocs                              html  
Rd warning: /tmp/RtmpilxalS/R.INSTALL6f486855445a/SNPlocs.Hsapiens.dbSNP.20090506/man/getSNPlocs.Rd:43: missing file link 'GRanges'
Rd warning: /tmp/RtmpilxalS/R.INSTALL6f486855445a/SNPlocs.Hsapiens.dbSNP.20090506/man/getSNPlocs.Rd:98: missing file link 'GRanges'
Rd warning: /tmp/RtmpilxalS/R.INSTALL6f486855445a/SNPlocs.Hsapiens.dbSNP.20090506/man/getSNPlocs.Rd:101: missing file link 'GRanges'
Rd warning: /tmp/RtmpilxalS/R.INSTALL6f486855445a/SNPlocs.Hsapiens.dbSNP.20090506/man/getSNPlocs.Rd:112: missing file link 'GRanges'
Rd warning: /tmp/RtmpilxalS/R.INSTALL6f486855445a/SNPlocs.Hsapiens.dbSNP.20090506/man/getSNPlocs.Rd:127: missing file link 'findOverlaps'
    package                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (SNPlocs.Hsapiens.dbSNP.20090506)
Making 'packages.html' ... done