SNPlocs.Hsapiens.dbSNP.20101109

Package: SNPlocs.Hsapiens.dbSNP.20101109
Title: SNP locations for Homo sapiens (dbSNP Build 132)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 132. The source data files used for this package
were created by NCBI on 9 November 2010 and contain SNPs mapped to
reference genome GRCh37.
WARNING: Note that the GRCh37 genome is the same as the hg19 genome
from UCSC except for the mitochondrion chromosome. Therefore, the SNPs
in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19
but this injection will exclude chrM (i.e. nothing will be injected
in that sequence).
Version: 0.99.7
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
Depends: R (>= 2.10), IRanges, GenomicRanges
Imports: methods, S4Vectors, IRanges, GenomicRanges
Suggests: Biostrings, BSgenome (>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19
License: Artistic-2.0
organism: Homo sapiens
species: Human
provider: NCBI
provider_version: 20101109
source_url: ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/ASN1_flat
biocViews: AnnotationData, Genetics, Homo_sapiens
Collate: 00datacache.R getSNPlocs.R COMPATIBLE_BSGENOMES.R zzz.R
NeedsCompilation: no
Packaged: 2015-08-10 18:50:21 UTC; hpages

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'SNPlocs.Hsapiens.dbSNP.20101109' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SNPlocs.Hsapiens.dbSNP.20101109'
    finding HTML links ... done
    getSNPlocs                              html  
Rd warning: /tmp/RtmpWeh8MZ/R.INSTALL6f8078f3c078/SNPlocs.Hsapiens.dbSNP.20101109/man/getSNPlocs.Rd:100: missing file link 'GRanges'
Rd warning: /tmp/RtmpWeh8MZ/R.INSTALL6f8078f3c078/SNPlocs.Hsapiens.dbSNP.20101109/man/getSNPlocs.Rd:155: missing file link 'GRanges'
Rd warning: /tmp/RtmpWeh8MZ/R.INSTALL6f8078f3c078/SNPlocs.Hsapiens.dbSNP.20101109/man/getSNPlocs.Rd:158: missing file link 'GRanges'
Rd warning: /tmp/RtmpWeh8MZ/R.INSTALL6f8078f3c078/SNPlocs.Hsapiens.dbSNP.20101109/man/getSNPlocs.Rd:169: missing file link 'GRanges'
Rd warning: /tmp/RtmpWeh8MZ/R.INSTALL6f8078f3c078/SNPlocs.Hsapiens.dbSNP.20101109/man/getSNPlocs.Rd:183: missing file link 'findOverlaps'
    package                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (SNPlocs.Hsapiens.dbSNP.20101109)
Making 'packages.html' ... done