SNPlocs.Hsapiens.dbSNP141.GRCh38

Package: SNPlocs.Hsapiens.dbSNP141.GRCh38
Title: SNP locations for Homo sapiens (dbSNP Build 141)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 141. The source data files used for this
package were created by NCBI on May 1st, 2014, and contain
SNPs mapped to reference genome GRCh38. Note that these SNPs
can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in
BSgenome.Hsapiens.UCSC.hg38.
Version: 0.99.10
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
Depends: R (>= 2.10), S4Vectors, IRanges, GenomicRanges, BSgenome (>=
1.33.9)
Imports: methods, utils, S4Vectors, IRanges, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.NCBI.GRCh38 (>= 1.3.19)
License: Artistic-2.0
organism: Homo sapiens
species: Human
provider: dbSNP
provider_version: dbSNP Human BUILD 141
release_date: May 2014
release_name: dbSNP Human BUILD 141
reference_genome: GRCh38
download_url:
ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/ASN1_flat/
download_date: Sep 9, 2014
biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens
Packaged: 2014-09-10 19:45:31 UTC; hpages

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'SNPlocs.Hsapiens.dbSNP141.GRCh38' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SNPlocs.Hsapiens.dbSNP141.GRCh38'
    finding HTML links ... done
    getSNPlocs                              html  
Rd warning: /tmp/RtmpbN4jqO/R.INSTALL6fde5f0f4633/SNPlocs.Hsapiens.dbSNP141.GRCh38/man/getSNPlocs.Rd:20: missing file link 'snplocs'
Rd warning: /tmp/RtmpbN4jqO/R.INSTALL6fde5f0f4633/SNPlocs.Hsapiens.dbSNP141.GRCh38/man/getSNPlocs.Rd:49: missing file link 'GRanges'
Rd warning: /tmp/RtmpbN4jqO/R.INSTALL6fde5f0f4633/SNPlocs.Hsapiens.dbSNP141.GRCh38/man/getSNPlocs.Rd:104: missing file link 'GRanges'
Rd warning: /tmp/RtmpbN4jqO/R.INSTALL6fde5f0f4633/SNPlocs.Hsapiens.dbSNP141.GRCh38/man/getSNPlocs.Rd:107: missing file link 'GRanges'
Rd warning: /tmp/RtmpbN4jqO/R.INSTALL6fde5f0f4633/SNPlocs.Hsapiens.dbSNP141.GRCh38/man/getSNPlocs.Rd:118: missing file link 'GRanges'
Rd warning: /tmp/RtmpbN4jqO/R.INSTALL6fde5f0f4633/SNPlocs.Hsapiens.dbSNP141.GRCh38/man/getSNPlocs.Rd:128: missing file link 'snplocs'
    package                                 html  
Rd warning: /tmp/RtmpbN4jqO/R.INSTALL6fde5f0f4633/SNPlocs.Hsapiens.dbSNP141.GRCh38/man/package.Rd:80: missing file link 'snplocs'
Rd warning: /tmp/RtmpbN4jqO/R.INSTALL6fde5f0f4633/SNPlocs.Hsapiens.dbSNP141.GRCh38/man/package.Rd:86: missing file link 'GRanges'
** building package indices
** testing if installed package can be loaded
* DONE (SNPlocs.Hsapiens.dbSNP141.GRCh38)
Making 'packages.html' ... done