Last data update: 2014.03.03

SNPlocs.Hsapiens.dbSNP144.GRCh37

Package: SNPlocs.Hsapiens.dbSNP144.GRCh37
Title: SNP locations for Homo sapiens (dbSNP Build 144)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 144. The source data files used for this
package were created by NCBI on May 30, 2015, and contain SNPs
mapped to reference genome GRCh37.p13.
WARNING: Note that the GRCh37.p13 genome is a patched version of
GRCh37 however the patch doesn't alter chromosomes 1-22, X, Y, MT.
GRCh37 itself is the same as the hg19 genome from UCSC *except*
for the mitochondrion chromosome. Therefore, the SNPs in this
package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 and they
will land at the correct location but this injection will exclude
chrM (i.e. nothing will be injected in that sequence).
Version: 0.99.11
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
Depends: R (>= 2.10), BSgenome
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19
License: Artistic-2.0
organism: Homo sapiens
common_name: Human
provider: dbSNP
provider_version: dbSNP Human BUILD 144
release_date: June 2015
release_name: dbSNP Human BUILD 144
reference_genome: GRCh37.p13
download_url:
ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/ASN1_flat/
download_date: July 24, 2015
biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens
NeedsCompilation: no
Packaged: 2015-07-30 07:40:12 UTC; hpages

● BiocViews: AnnotationData, Genetics, Homo_sapiens, SNPlocs
● 0 images, 2 functions, 0 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'SNPlocs.Hsapiens.dbSNP144.GRCh37' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
    finding HTML links ... done
    getSNPlocs                              html  
Rd warning: /tmp/Rtmp5WGNIr/R.INSTALL702d9c1e7c4/SNPlocs.Hsapiens.dbSNP144.GRCh37/man/getSNPlocs.Rd:20: missing file link 'snpcount'
Rd warning: /tmp/Rtmp5WGNIr/R.INSTALL702d9c1e7c4/SNPlocs.Hsapiens.dbSNP144.GRCh37/man/getSNPlocs.Rd:49: missing file link 'GRanges'
Rd warning: /tmp/Rtmp5WGNIr/R.INSTALL702d9c1e7c4/SNPlocs.Hsapiens.dbSNP144.GRCh37/man/getSNPlocs.Rd:104: missing file link 'GRanges'
Rd warning: /tmp/Rtmp5WGNIr/R.INSTALL702d9c1e7c4/SNPlocs.Hsapiens.dbSNP144.GRCh37/man/getSNPlocs.Rd:107: missing file link 'GRanges'
Rd warning: /tmp/Rtmp5WGNIr/R.INSTALL702d9c1e7c4/SNPlocs.Hsapiens.dbSNP144.GRCh37/man/getSNPlocs.Rd:118: missing file link 'GRanges'
Rd warning: /tmp/Rtmp5WGNIr/R.INSTALL702d9c1e7c4/SNPlocs.Hsapiens.dbSNP144.GRCh37/man/getSNPlocs.Rd:128: missing file link 'snpcount'
    package                                 html  
Rd warning: /tmp/Rtmp5WGNIr/R.INSTALL702d9c1e7c4/SNPlocs.Hsapiens.dbSNP144.GRCh37/man/package.Rd:80: missing file link 'snpcount'
Rd warning: /tmp/Rtmp5WGNIr/R.INSTALL702d9c1e7c4/SNPlocs.Hsapiens.dbSNP144.GRCh37/man/package.Rd:86: missing file link 'GRanges'
** building package indices
** testing if installed package can be loaded
* DONE (SNPlocs.Hsapiens.dbSNP144.GRCh37)
Making 'packages.html' ... done