SPIA

Package: SPIA
Version: 2.24.0
Date: 2013-2-20
Title: Signaling Pathway Impact Analysis (SPIA) using combined evidence
of pathway over-representation and unusual signaling
perturbations
Author: Adi Laurentiu Tarca <atarca@med.wayne.edu>, Purvesh Kathri
<purvesh@cs.wayne.edu> and Sorin Draghici <sorin@wayne.edu>
Depends: R (>= 2.14.0), graphics, KEGGgraph
Suggests: graph, Rgraphviz, hgu133plus2.db
Maintainer: Adi Laurentiu Tarca <atarca@med.wayne.edu>
Description: This package implements the Signaling Pathway Impact
Analysis (SPIA) which uses the information form a list of
differentially expressed genes and their log fold changes
together with signaling pathways topology, in order to identify
the pathways most relevant to the condition under the study.
License: file LICENSE
License_restricts_use: yes
URL: http://bioinformatics.oxfordjournals.org/cgi/reprint/btn577v1
Collate: spia.R plotP.R combfunc.R getP2.R makeSPIAdata.R
Imports: graphics
LazyLoad: yes
Packaged: 2016-05-04 03:17:12 UTC; biocbuild
biocViews: Microarray, GraphAndNetwork
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'SPIA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SPIA'
    finding HTML links ... done
    SPIA-internal                           html  
    Vessels                                 html  
    colorectalcancer                        html  
    combfunc                                html  
    makeSPIAdata                            html  
    plotP                                   html  
    spia                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SPIA)
Making 'packages.html' ... done