STATegRa

Package: STATegRa
Type: Package
Title: Classes and methods for multi-omics data integration
Version: 1.6.2
Date: 2014-09-09
Author: STATegra Consortia
Maintainer: David Gomez-Cabrero <david.gomezcabrero@ki.se>, Patricia
Sebastián-León <psebastian@cipf.es>, Gordon Ball <gordon.ball@ki.se>
Depends: R (>= 2.10)
Imports: Biobase, gridExtra, ggplot2, methods, grid, MASS, calibrate,
gplots, edgeR, limma, foreach, affy
Suggests: RUnit, BiocGenerics, knitr (>= 1.6), rmarkdown, BiocStyle (>=
1.3), roxygen2, doSNOW
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: Software, StatisticalMethod, Clustering, DimensionReduction,
PrincipalComponent
Description: Classes and tools for multi-omics data integration.
License: GPL-2
LazyLoad: yes
Collate: 'STATegRa_fused.R' 'STATegRa_holistOmics.R'
'STATegRa_holistOmics_internal.R'
'STATegRa_omicsCLUST_bioMap.R' 'STATegRa_omicsCLUST_bioDist.R'
'STATegRa_omicsCLUST_bioDistW.R' 'STATegRa_omicsPCA_caClass.R'
'STATegRa_omicsPCA_methods.R' 'STATegRa_omicsPCA_plotting.R'
'STATegRa_package.R'
NeedsCompilation: no
Packaged: 2016-05-16 05:00:31 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'STATegRa' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'Biobase::combine' by 'gridExtra::combine' when loading 'STATegRa'
** help
*** installing help indices
  converting help for package 'STATegRa'
    finding HTML links ... done
    PCA.selection                           html  
    STATegRa                                html  
    STATegRaUsersGuide                      html  
    STATegRa_data                           html  
    STATegRa_data_TCGA_BRCA                 html  
    bioDist                                 html  
    bioDistFeature                          html  
    bioDistFeaturePlot                      html  
    bioDistW                                html  
    bioDistWPlot                            html  
    bioDistclass                            html  
    bioMap                                  html  
    biplotRes                               html  
    caClass-class                           html  
    createOmicsExpressionSet                html  
    getInitialData                          html  
    getLoadings                             html  
    getMethodInfo                           html  
    getPreprocessing                        html  
    getScores                               html  
    getVAF                                  html  
    holistOmics                             html  
    modelSelection                          html  
    omicsCompAnalysis                       html  
    plotRes                                 html  
    plotVAF                                 html  
    selectCommonComps                       html  
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'Biobase::combine' by 'gridExtra::combine' when loading 'STATegRa'
* DONE (STATegRa)
Making 'packages.html' ... done