ScISI

Package: ScISI
Title: In Silico Interactome
Version: 1.44.0
Author: Tony Chiang <tchiang@fhcrc.org>
Description: Package to create In Silico Interactomes
Depends: R (>= 2.10), GO.db, RpsiXML, annotate, apComplex
Imports: AnnotationDbi, GO.db, RpsiXML, annotate, methods,
org.Sc.sgd.db, utils
Suggests: ppiData, xtable
Maintainer: Tony Chiang <tchiang@fhcrc.org>
License: LGPL
biocViews: GraphAndNetwork, Proteomics, NetworkInference, DecisionTree
NeedsCompilation: no
Packaged: 2016-05-04 02:50:43 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ScISI' ...
** R
** data
** inst
** preparing package for lazy loading
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst
** help
*** installing help indices
  converting help for package 'ScISI'
    finding HTML links ... done
    Desc-methods                            html  
    ID-methods                              html  
    JaccardCoef                             html  
    ScISI                                   html  
    ScISI2html                              html  
    arp23                                   html  
    arp23G                                  html  
    arp23Orf                                html  
    arp23Y2HG                               html  
    calcGraphStats                          html  
    cfia                                    html  
    cfiaOrf                                 html  
    checkComplex                            html  
    checkSGN                                html  
    compBijection                           html  
    compareComplex                          html  
    createGODataFrame                       html  
    createGOMatrix                          html  
    createMipsDataFrame                     html  
    createMipsMatrix                        html  
    createYeastDataObj                      html  
    dataS                                   html  
    eAt                                     html  
    eAt2                                    html  
    edgeProp                                html  
    egEBI16112                              html  
    expStats                                html  
    findSubComp                             html  
    gavin2mergeMG                           html  
    getAPMSData                             html  
    getGOInfo                               html  
    getLocOrfs                              html  
    getMipsInfo                             html  
    getURL-methods                          html  
    graphSumStats                           html  
    ho2mergeMGG                             html  
    krogan2mergeMGGH                        html  
    locScISI                                html  
    mapping2SysG                            html  
    mappingsG                               html  
    maximizeSimilarity                      html  
    meanDeg                                 html  
    mergeBGMat                              html  
    mips2go                                 html  
    nAt                                     html  
    nAtMap                                  html  
    nonGenes                                html  
    nucComp                                 html  
    recCompSize                             html  
    redundantM                              html  
    rmByEvi                                 html  
    runAlignment                            html  
    runCompareComplex                       html  
    subCompM                                html  
    sumStats                                html  
    unWantedComp                            html  
    unwanted                                html  
    xtraGO                                  html  
    xtraGONodes                             html  
    yeastData-class                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst
* DONE (ScISI)
Making 'packages.html' ... done