SimRAD

Package: SimRAD
Type: Package
Title: Simulations to Predict the Number of RAD and GBS Loci
Version: 0.96
Date: 2015-11-04
Authors@R: c(person("Olivier", "Lepais", role=c("aut", "cre"), email = "olepais@st-pee.inra.fr"), person("Jason", "Weir", role=c("aut")))
Maintainer: Olivier Lepais <olepais@st-pee.inra.fr>
Depends: Biostrings, ShortRead, zlibbioc
Imports: stats, graphics
Suggests: seqinr
Description: Provides a number of functions to simulate restriction enzyme digestion, library construction and fragments size selection to predict the number of loci expected from most of the Restriction site Associated DNA (RAD) and Genotyping By Sequencing (GBS) approaches. SimRAD estimates the number of loci expected from a particular genome depending on the protocol type and parameters allowing to assess feasibility, multiplexing capacity and the amount of sequencing required.
License: GPL-2
NeedsCompilation: no
Packaged: 2015-11-04 12:12:43 UTC; olepais
Author: Olivier Lepais [aut, cre],
Jason Weir [aut]
Repository: CRAN
Date/Publication: 2016-01-06 17:22:25

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'SimRAD' ...
** package 'SimRAD' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SimRAD'
    finding HTML links ... done
    SimRAD-package                          html  
    adapt.select                            html  
    exclude.seqsite                         html  
    insilico.digest                         html  
    insilico.digest.internal                html  
    ref.DNAseq                              html  
    sim.DNAseq                              html  
    size.select                             html  
** building package indices
** testing if installed package can be loaded
* DONE (SimRAD)
Making 'packages.html' ... done