Last data update: 2014.03.03

Statomica

Package: Statomica
Type: Package
Title: Statomica utility package
Version: 1.0
Date: 2014-09-23
Author: Zahra Montazeri, Alaa Ali, Kyle Leckett, Marta Padilla and David R. Bickel
Maintainer: M. Padilla <padilla.mpf@gmail.com>
Description: Statomica is a suite of R functions that are needed for
certain packages such as LFDR.MLE, PsiHat, HistogramLFDR, combine and LFDRenrich.
License: CC BY-NC 4.0
Depends: R (>= 2.14.0), Biobase, multtest, distr, fBasics, methods
URL: http://www.cran.r-project.org, http://www.bioconductor.org,
http://www.statomics.com
Packaged: 2014-12-26 12:55:24 UTC; martapadilla
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-26 14:36:52

● 0 images, 8 functions, 0 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Statomica' ...
** package 'Statomica' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
Warning in .removePreviousCoerce(class1, class2, where, prevIs) :
  methods currently exist for coercing from "Matrix" to "vector"; they will be replaced.
Creating a generic function for 'logb' from package 'base' in package 'Statomica'
Creating a generic function for 'stripchart' from package 'graphics' in package 'Statomica'
Creating a generic function from function 'objectSize' in package 'Statomica'
Creating a generic function from function 'Stripchart' in package 'Statomica'
Creating a generic function from function 'scalar' in package 'Statomica'
Creating a generic function from function 'Scalar' in package 'Statomica'
Creating a generic function from function 'pNumeric' in package 'Statomica'
Creating a generic function from function 'Numeric' in package 'Statomica'
Creating a generic function from function 'Matrix' in package 'Statomica'
Creating a generic function from function 'Aggregate' in package 'Statomica'
Creating a generic function from function 'xprnSubset' in package 'Statomica'
Creating a generic function from function 'unpair' in package 'Statomica'
Creating a generic function from function 'xprnSet' in package 'Statomica'
Creating a generic function from function 'as.xprnSet' in package 'Statomica'
Creating a generic function from function 'removeMissing' in package 'Statomica'
Creating a generic function from function 'Rep' in package 'Statomica'
Creating a generic function from function 'leave.out' in package 'Statomica'
Creating a generic function from function 'xprnSetPair' in package 'Statomica'
Creating a generic function from function 'xprnSetObjectPair' in package 'Statomica'
Creating a generic function from function 'smoothSpline' in package 'Statomica'
Creating a generic function from function 'Lowess' in package 'Statomica'
Creating a generic function from function 'movingAverage' in package 'Statomica'
Creating a generic function from function 'smoothData' in package 'Statomica'
Creating a generic function from function 'movingLocation' in package 'Statomica'
Creating a generic function from function 's3' in package 'Statomica'
Creating a generic function from function 'p.value' in package 'Statomica'
Creating a generic function from function 'Lines' in package 'Statomica'
Creating a generic function from function 'Plot' in package 'Statomica'
Creating a generic function from function 'sameNames' in package 'Statomica'
Creating a generic function from function 'sample.size' in package 'Statomica'
Creating a generic function from function 'Mean' in package 'Statomica'
Creating a generic function from function 'geoMean' in package 'Statomica'
Creating a generic function from function 'Sd' in package 'Statomica'
Creating a generic function from function 'oneLeftOut' in package 'Statomica'
Creating a generic function from function 'noneLeftOut' in package 'Statomica'
Creating a generic function from function 'squaredError' in package 'Statomica'
Creating a generic function from function 'predictionError' in package 'Statomica'
Creating a generic function from function 'accumulate' in package 'Statomica'
Creating a generic function from function 'biasEstimate' in package 'Statomica'
Creating a generic function from function 'corrected' in package 'Statomica'
Creating a generic function from function 'Rank' in package 'Statomica'
Creating a generic function from function 'Sample' in package 'Statomica'
Creating a generic function from function 'parametricBootstrap' in package 'Statomica'
Creating a generic function from function 'Combine' in package 'Statomica'
Creating a generic function from function 'Domain' in package 'Statomica'
Creating a generic function from function 'Range' in package 'Statomica'
Creating a generic function from function 'Density' in package 'Statomica'
Creating a generic function from function 'closest' in package 'Statomica'
Creating a generic function from function 'Sum' in package 'Statomica'
Creating a generic function from function 'multiply' in package 'Statomica'
Creating a generic function from function 'divide' in package 'Statomica'
Creating a generic function from function 'add' in package 'Statomica'
Creating a generic function from function 'ln' in package 'Statomica'
Creating a generic function from function 'anti.ln' in package 'Statomica'
Creating a generic function from function 'export' in package 'Statomica'
Creating a generic function from function 'Approx' in package 'Statomica'
Creating a generic function from function 'sup' in package 'Statomica'
Creating a generic function from function 'inf' in package 'Statomica'
Creating a generic function from function 'CI' in package 'Statomica'
Creating a generic function from function 'subtract' in package 'Statomica'
Creating a generic function for 'hist' from package 'graphics' in package 'Statomica'
Creating a generic function from function 'estimate' in package 'Statomica'
Creating a generic function from function 'Location' in package 'Statomica'
Creating a generic function from function 'Scale' in package 'Statomica'
Creating a generic function from function 'Order' in package 'Statomica'
Creating a generic function from function 'moderatedT' in package 'Statomica'
Creating a generic function from function 'unsortableEstimate' in package 'Statomica'
Creating a generic function from function 'sortableEstimate' in package 'Statomica'
Creating a generic function from function 'EstimateLeftOut' in package 'Statomica'
Creating a generic function from function 'sorted' in package 'Statomica'
Creating a generic function from function 'biasEstimates' in package 'Statomica'
Creating a generic function from function 'sim.biasEstimates' in package 'Statomica'
Creating a generic function from function 'zplot' in package 'Statomica'
Creating a generic function from function 'qvaluen' in package 'Statomica'
Creating a generic function from function 'pvalue' in package 'Statomica'
Creating a generic function from function 'zvalue' in package 'Statomica'
Creating a generic function from function 'prior0' in package 'Statomica'
Creating a generic function from function 'fdr' in package 'Statomica'
Creating a generic function from function 'eFdr' in package 'Statomica'
Creating a generic function from function 'bFdr' in package 'Statomica'
Creating a generic function from function 'sFdr' in package 'Statomica'
Creating a generic function from function 'statistic' in package 'Statomica'
Creating a generic function from function 'Prob0' in package 'Statomica'
Creating a generic function from function 'arbitrarize' in package 'Statomica'
Creating a generic function from function 'loss' in package 'Statomica'
Creating a generic function from function 'losses' in package 'Statomica'
Creating a generic function from function 'ProbabilityEstimate' in package 'Statomica'
Creating a generic function from function 'P0' in package 'Statomica'
Creating a generic function for 'median' from package 'stats' in package 'Statomica'
Creating a generic function from function 'is.nothing' in package 'Statomica'
Creating a generic function from function 'zeta' in package 'Statomica'
Creating a generic function for 'family' from package 'stats' in package 'Statomica'
Creating a generic function from function 'new.log' in package 'Statomica'
Found more than one class "Matrix" in cache; using the first, from namespace 'Matrix'
Found more than one class "Matrix" in cache; using the first, from namespace 'Matrix'
Found more than one class "Matrix" in cache; using the first, from namespace 'Matrix'
Found more than one class "Matrix" in cache; using the first, from namespace 'Matrix'
Found more than one class "Matrix" in cache; using the first, from namespace 'Matrix'
Creating a generic function from function 'XprnSet' in package 'Statomica'
Creating a generic function from function 'is.prob' in package 'Statomica'
Creating a generic function from function 'nplot' in package 'Statomica'
** help
*** installing help indices
  converting help for package 'Statomica'
    finding HTML links ... done
    Statomica-internal                      html  
    Statomica-package                       html  
    d.absTd                                 html  
    finding level-2 HTML links ... done

Rd warning: /tmp/Rtmp1P9qsR/R.INSTALLdd563f4dada/Statomica/man/d.absTd.Rd:54: missing file link 'distr-package'
    stat                                    html  
    xprnSet-class                           html  
    xprnSet                                 html  
    xprnSetPair-class                       html  
    xprnSetPair                             html  
** building package indices
** testing if installed package can be loaded
Error in .mergeMethodsTable(generic, mtable, tt, attach) : 
  trying to get slot "defined" from an object of a basic class ("list") with no slots
Error: loading failed
Execution halted
ERROR: loading failed
* removing '/home/ddbj/local/lib64/R/library/Statomica'

Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO