Streamer

Package: Streamer
Type: Package
Title: Enabling stream processing of large files
Version: 1.18.0
Author: Martin Morgan, Nishant Gopalakrishnan
Maintainer: Martin Morgan <martin.morgan@roswellpark.org>
Description: Large data files can be difficult to work with in R,
where data generally resides in memory. This package encourages a
style of programming where data is 'streamed' from disk into R via
a `producer' and through a series of `consumers' that, typically
reduce the original data to a manageable size. The package
provides useful Producer and Consumer stream components for
operations such as data input, sampling, indexing, and
transformation; see package?Streamer for details.
License: Artistic-2.0
LazyLoad: yes
Imports: methods, graph, RBGL, parallel, BiocGenerics
Suggests: RUnit, Rsamtools (>= 1.5.53), GenomicAlignments, Rgraphviz
biocViews: Infrastructure, DataImport
Collate: AllGenerics.R Streamer-class.R Producer-class.R
Consumer-class.R Stream-class.R ConnectionProducer-classes.R
RawInput-class.R Seq-class.R Downsample-class.R
FunctionProducerConsumer-classes.R ParallelParam-classes.R
Team-class.R Team-methods.R Reducer-class.R DAGParam-class.R
DAGParam-methods.R DAGTeam-class.R Utility-classes.R
lapply-methods.R stream-methods.R plot-methods.R zzz.R
NeedsCompilation: yes
Packaged: 2016-05-04 04:09:28 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Streamer' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c R_init_Streamer.c -o R_init_Streamer.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c raw_input.c -o raw_input.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Streamer.so R_init_Streamer.o raw_input.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/Streamer/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Streamer'
    finding HTML links ... done
    ConnectionProducer-classes              html  
    Consumer-class                          html  
    DAGTeam-class                           html  
    finding level-2 HTML links ... done

    Downsample-class                        html  
    FunctionProducerConsumer-classes        html  
    ParallelParam-classes                   html  
    Producer-class                          html  
    RawInput-class                          html  
    Reducer-class                           html  
    Seq-class                               html  
    Stream-class                            html  
    Streamer-package                        html  
    Team-class                              html  
    Utility-classes                         html  
    reset                                   html  
    status                                  html  
    yield                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Streamer)
Making 'packages.html' ... done