TIN

Package: TIN
Type: Package
Title: Transcriptome instability analysis
Version: 1.4.1
Date: 2014-07-14
Author: Bjarne Johannessen, Anita Sveen and Rolf I. Skotheim
Maintainer: Bjarne Johannessen <bjajoh@rr-research.no>
VignetteBuilder: knitr
Depends: R (>= 2.12.0), data.table, impute, aroma.affymetrix
Imports: WGCNA, squash, stringr
Suggests: knitr, aroma.light, affxparser, RUnit, BiocGenerics
biocViews: ExonArray, Microarray, GeneExpression, AlternativeSplicing,
Genetics, DifferentialSplicing
Description: The TIN package implements a set of tools for
transcriptome instability analysis based on exon expression
profiles. Deviating exon usage is studied in the context of
splicing factors to analyse to what degree transcriptome
instability is correlated to splicing factor expression. In the
transcriptome instability correlation analysis, the data is
compared to both random permutations of alternative splicing
scores and expression of random gene sets.
License: Artistic-2.0
NeedsCompilation: no
Packaged: 2016-05-16 05:19:23 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'TIN' ...
** R
** data
** inst
** preparing package for lazy loading
The following object is masked _by_ package:aroma.affymetrix:

    writeCdf

The following object is masked from package:R.utils:

    findFiles

** help
*** installing help indices
  converting help for package 'TIN'
    finding HTML links ... done
    aberrantExonUsage                       html  
    clusterPlot                             html  
    correlation                             html  
    correlationPlot                         html  
    firmaAnalysis                           html  
    geneAnnotation                          html  
    geneSetCorrelation                      html  
    geneSets                                html  
    posNegCorrPlot                          html  
    probesetPermutations                    html  
    readGeneSummaries                       html  
    sampleSetFirmaScores                    html  
    sampleSetGeneSummaries                  html  
    scatterPlot                             html  
    splicingFactors                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
The following object is masked _by_ package:aroma.affymetrix:

    writeCdf

The following object is masked from package:R.utils:

    findFiles

* DONE (TIN)
Making 'packages.html' ... done