VGAM

Package: VGAM
Version: 1.0-2
Date: 2016-05-26
Title: Vector Generalized Linear and Additive Models
Author: Thomas W. Yee <t.yee@auckland.ac.nz>
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Depends: R (>= 3.1.0), methods, stats, stats4, splines
Suggests: VGAMdata, MASS, mgcv
Description: An implementation of about 6 major classes of
statistical regression models. At the heart of it are the
vector generalized linear and additive model (VGLM/VGAM)
classes, and the book "Vector Generalized Linear and
Additive Models: With an Implementation in R" (Yee, 2015)
<DOI:10.1007/978-1-4939-2818-7>
gives details of the statistical framework and VGAM package.
Currently only fixed-effects models are implemented,
i.e., no random-effects models. Many (150+) models and
distributions are estimated by maximum likelihood estimation
(MLE) or penalized MLE, using Fisher scoring. VGLMs can be
loosely thought of as multivariate GLMs. VGAMs are data-driven
VGLMs (i.e., with smoothing). The other classes are RR-VGLMs
(reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs,
RCIMs (row-column interaction models)---these classes perform
constrained and unconstrained quadratic ordination (CQO/UQO)
models in ecology, as well as constrained additive ordination
(CAO). Note that these functions are subject to change;
see the NEWS and ChangeLog files for latest changes.
License: GPL-2 | GPL-3
URL: https://www.stat.auckland.ac.nz/~yee/VGAM
NeedsCompilation: yes
BuildVignettes: yes
LazyLoad: yes
LazyData: yes
Packaged: 2016-05-26 13:22:19 UTC; tyee001
Repository: CRAN
Date/Publication: 2016-05-27 18:08:24

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'VGAM' ...
** package 'VGAM' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c caqo3.c -o caqo3.o
f95   -fpic  -g -O2  -c cqof.f -o cqof.o
f95   -fpic  -g -O2  -c ei.f -o ei.o
f95   -fpic  -g -O2  -c fgam.f -o fgam.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gautr.c -o gautr.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c lerchphi.c -o lerchphi.o
f95   -fpic  -g -O2  -c lms.f -o lms.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c muxr3.c -o muxr3.o
f95   -fpic  -g -O2  -c rgam.f -o rgam.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rgam3.c -o rgam3.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c specfun3.c -o specfun3.o
f95   -fpic  -g -O2  -c tyeepolygamma.f -o tyeepolygamma.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c tyeepolygamma3.c -o tyeepolygamma3.o
f95   -fpic  -g -O2  -c vcall2.f -o vcall2.o
f95   -fpic  -g -O2  -c vdigami.f -o vdigami.o
f95   -fpic  -g -O2  -c veigen.f -o veigen.o
f95   -fpic  -g -O2  -c vgam.f -o vgam.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c vgam3.c -o vgam3.o
f95   -fpic  -g -O2  -c vlinpack1.f -o vlinpack1.o
f95   -fpic  -g -O2  -c vlinpack2.f -o vlinpack2.o
f95   -fpic  -g -O2  -c vlinpack3.f -o vlinpack3.o
f95   -fpic  -g -O2  -c vmux.f -o vmux.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c vmux3.c -o vmux3.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c zeta3.c -o zeta3.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o VGAM.so caqo3.o cqof.o ei.o fgam.o gautr.o lerchphi.o lms.o muxr3.o rgam.o rgam3.o specfun3.o tyeepolygamma.o tyeepolygamma3.o vcall2.o vdigami.o veigen.o vgam.o vgam3.o vlinpack1.o vlinpack2.o vlinpack3.o vmux.o vmux3.o zeta3.o -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/VGAM/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'coefficients' from package 'stats' in package 'VGAM'
Creating a generic function for 'fitted' from package 'stats' in package 'VGAM'
Creating a generic function for 'fitted.values' from package 'stats' in package 'VGAM'
Creating a generic function for 'df.residual' from package 'stats' in package 'VGAM'
Creating a generic function for 'residuals' from package 'stats' in package 'VGAM'
Creating a new generic function for 'Rank' in package 'VGAM'
Creating a generic function for 'formula' from package 'stats' in package 'VGAM'
Creating a generic function for 'variable.names' from package 'stats' in package 'VGAM'
Creating a generic function for 'case.names' from package 'stats' in package 'VGAM'
Creating a generic function for 'hatvalues' from package 'stats' in package 'VGAM'
Creating a generic function for 'dfbeta' from package 'stats' in package 'VGAM'
** help
*** installing help indices
  converting help for package 'VGAM'
    finding HTML links ... done
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    plotdeplot.lmscreg                      html  
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    sc.t2UC                                 html  
    seq2binomial                            html  
    setup.smart                             html  
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    smart.expression                        html  
    smart.mode.is                           html  
    smartpred                               html  
    sratio                                  html  
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    summaryvglm                             html  
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    trplot                                  html  
    trplot.qrrvglm                          html  
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    ucberk                                  html  
    undocumented-methods                    html  
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    vcovvlm                                 html  
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    venice                                  html  
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    weibullR                                html  
    weightsvglm                             html  
    wine                                    html  
    wrapup.smart                            html  
    yeo.johnson                             html  
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    yulesimonUC                             html  
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    zabinomUC                               html  
    zabinomial                              html  
    zageomUC                                html  
    zageometric                             html  
    zanegbinUC                              html  
    zanegbinomial                           html  
    zapoisUC                                html  
    zapoisson                               html  
    zero                                    html  
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    zetaUC                                  html  
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    zibinomUC                               html  
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    zibinomial                              html  
    zigeomUC                                html  
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    zigeometric                             html  
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    zinegbinUC                              html  
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    zinegbinomial                           html  
    zipebcom                                html  
    zipf                                    html  
    zipfUC                                  html  
    zipoisUC                                html  
    zipoisson                               html  
    zoabetaR                                html  
    zoabetaUC                               html  
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** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (VGAM)
Making 'packages.html' ... done