VariABEL

Package: VariABEL
Type: Package
Title: Testing of genotypic variance heterogeneity to detect
potentially interacting SNP.
Version: 0.9-2
Date: 2013-11-07
Author: Maksim Struchalin
Maintainer: Maksim Struchalin <m.v.struchalin@mail.ru>
Depends: R (>= 2.13.0)
Suggests: GenABEL, DatABEL
Description: Presence of interaction between a SNP and another SNP (or another factor) can result
in heterogeneity of variance between the genotypes of an interacting SNP.
Detecting such heterogeneity gives prior knowledge for constructing a genetic model
underlying complex trait.
License: GPL (>= 2)
Packaged: 2014-01-30 10:14:25 UTC; maksim
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-01-30 12:43:52

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'VariABEL' ...
** package 'VariABEL' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c AbstractMatrix.cpp -o AbstractMatrix.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c AbstractMatrix_R.cpp -o AbstractMatrix_R.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c CastUtils.cpp -o CastUtils.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c FileVector.cpp -o FileVector.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c FilteredMatrix.cpp -o FilteredMatrix.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c FilteredMatrix_R.cpp -o FilteredMatrix_R.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c Logger.cpp -o Logger.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c RealHandlerWrapper.cpp -o RealHandlerWrapper.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c ReusableFileHandle.cpp -o ReusableFileHandle.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c Transposer.cpp -o Transposer.o
f95   -fpic  -g -O2  -c ch2inv.f -o ch2inv.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c convert_util.cpp -o convert_util.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c dautil.cpp -o dautil.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c frutil.cpp -o frutil.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c gtps_container.cpp -o gtps_container.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c inverse_variance_metaanalysis.cpp -o inverse_variance_metaanalysis.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c iterator.cpp -o iterator.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c iterator_functions.cpp -o iterator_functions.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c linear_regression.cpp -o linear_regression.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c supplementary_functions.cpp -o supplementary_functions.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c var_homogeneity_test_C.cpp -o var_homogeneity_test_C.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c var_homogeneity_tests.cpp -o var_homogeneity_tests.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c var_meta_gwaa_C.cpp -o var_meta_gwaa_C.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o VariABEL.so AbstractMatrix.o AbstractMatrix_R.o CastUtils.o FileVector.o FilteredMatrix.o FilteredMatrix_R.o Logger.o RealHandlerWrapper.o ReusableFileHandle.o Transposer.o ch2inv.o convert_util.o dautil.o frutil.o gtps_container.o inverse_variance_metaanalysis.o iterator.o iterator_functions.o linear_regression.o supplementary_functions.o var_homogeneity_test_C.o var_homogeneity_tests.o var_meta_gwaa_C.o -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/VariABEL/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'VariABEL'
    finding HTML links ... done
    var_test_gwaa                           html  
** building package indices
** testing if installed package can be loaded
* DONE (VariABEL)
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