a4Base

Package: a4Base
Type: Package
Title: Automated Affymetrix Array Analysis Base Package
Version: 1.20.0
Date: 2013-10-02
Author: Willem Talloen, Tobias Verbeke, Tine Casneuf, An De Bondt,
Steven Osselaer and Hinrich Goehlmann, Willem Ligtenberg
Maintainer: Tobias Verbeke <tobias.verbeke@openanalytics.eu>, Willem
Ligtenberg <willem.ligtenberg@openanalytics.eu>
Description: Automated Affymetrix Array Analysis
Depends: methods, graphics, grid, Biobase, AnnotationDbi, annaffy, mpm,
genefilter, limma, multtest, glmnet, a4Preproc, a4Core, gplots
Suggests: Cairo, ALL
Enhances: gridSVG, JavaGD
License: GPL-3
biocViews: Microarray
NeedsCompilation: no
Packaged: 2016-05-04 04:01:47 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'a4Base' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'a4Base'
    finding HTML links ... done
    ExpressionSetWithComputation            html  
Rd warning: /tmp/RtmpPv6i08/R.INSTALL7f911d254240/a4Base/man/ExpressionSetWithComputation.Rd:23: missing file link 'ExpressionSet'
Rd warning: /tmp/RtmpPv6i08/R.INSTALL7f911d254240/a4Base/man/ExpressionSetWithComputation.Rd:24: missing file link 'eSet'
Rd warning: /tmp/RtmpPv6i08/R.INSTALL7f911d254240/a4Base/man/ExpressionSetWithComputation.Rd:25: missing file link 'VersionedBiobase'
Rd warning: /tmp/RtmpPv6i08/R.INSTALL7f911d254240/a4Base/man/ExpressionSetWithComputation.Rd:26: missing file link 'Versioned'
Rd warning: /tmp/RtmpPv6i08/R.INSTALL7f911d254240/a4Base/man/ExpressionSetWithComputation.Rd:33: missing file link 'ExpressionSet'
    a4palette                               html  
Rd warning: /tmp/RtmpPv6i08/R.INSTALL7f911d254240/a4Base/man/a4palette.Rd:27: missing file link 'rainbow'
    addQuantilesColors                      html  
    boxPlot                                 html  
    combineTwoExpressionSet                 html  
Rd warning: /tmp/RtmpPv6i08/R.INSTALL7f911d254240/a4Base/man/combineTwoExpressionSet.Rd:22: missing file link 'ExpressionSet'
    computeLogRatio                         html  
    createExpressionSet                     html  
Rd warning: /tmp/RtmpPv6i08/R.INSTALL7f911d254240/a4Base/man/createExpressionSet.Rd:30: missing file link 'ExpressionSet'
    filterVarInt                            html  
    heatmap.expressionSet                   html  
    histPvalue                              html  
    histpvalueplotter                       html  
    lassoReg                                html  
    limmaTwoLevels                          html  
    logReg                                  html  
    nlcvTT                                  html  
    plot1gene                               html  
    plotComb2Samples                        html  
    plotCombMultSamples                     html  
    plotCombination2genes                   html  
    plotLogRatio                            html  
    probabilitiesPlot                       html  
    probe2gene                              html  
    profilesPlot                            html  
    propDEgenes-methods                     html  
    propDEgenes                             html  
    propdegenescalculation                  html  
    replicates                              html  
    spectralMap-methods                     html  
    spectralMap                             html  
    tTest                                   html  
Rd warning: /tmp/RtmpPv6i08/R.INSTALL7f911d254240/a4Base/man/tTest.Rd:40: missing file link 'rowttests'
    topTable-methods                        html  
    volcanoPlot-methods                     html  
    volcanoPlot                             html  
    volcanoplotter                          html  
** building package indices
** testing if installed package can be loaded
* DONE (a4Base)
Making 'packages.html' ... done