Last data update: 2014.03.03
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aCGH
Package: aCGH
Title: Classes and functions for Array Comparative Genomic
Hybridization data.
Version: 1.50.0
Date: 2010-04-15
Depends: R (>= 2.10), cluster, survival, multtest
Imports: Biobase, cluster, grDevices, graphics, methods, multtest,
stats, survival, splines, utils
Author: Jane Fridlyand <jfridlyand@cc.ucsf.edu>, Peter Dimitrov
<dimitrov@stat.Berkeley.EDU>
Description: Functions for reading aCGH data from image analysis output
files and clone information files, creation of aCGH S3 objects
for storing these data. Basic methods for accessing/replacing,
subsetting, printing and plotting aCGH objects.
Maintainer: Peter Dimitrov <dimitrov@stat.Berkeley.EDU>
License: GPL-2
Collate: aCGH.R aCGH.plotting.R aCGH.read.R aCGH.test.R clusterGenome.R
funcs.dataplot.R heatmap.R hmm.R human.chrom.info.Jul03.R
human.chrom.info.May04.R mergeLevels.R
LazyLoad: yes
biocViews: CopyNumberVariation, DataImport, Genetics
NeedsCompilation: yes
Packaged: 2016-05-04 02:42:00 UTC; biocbuild
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'aCGH' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -g3 -I/usr/local/include -fpic -g -O2 -c hmm.cpp -o hmm.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o aCGH.so hmm.o -lm -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/aCGH/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'aCGH'
finding HTML links ... done
aCGH html
aCGH.process html
aCGH.read.Sprocs html
aCGH.test html
clusterGenome html
colorectal html
computeSD.func html
fga.func html
find.genomic.events html
find.hmm.states html
findAber.func html
findAmplif.func html
findOutliers.func html
findTrans.func html
gainLoss html
heatmap html
human.chrom.info.Jul03 html
human.chrom.info.May04 html
impute.HMM html
impute.lowess html
mergeFunc html
mergeLevels html
plotFreqStat html
plotGenome html
plotHmmStates html
plotSummaryProfile html
states.hmm.func html
summarize.clones html
threshold.func html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (aCGH)
Making 'packages.html' ... done
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