Last data update: 2014.03.03

ade4

Package: ade4
Version: 1.7-4
Date: 2016-03-01
Title: Analysis of Ecological Data : Exploratory and Euclidean Methods
in Environmental Sciences
Author: Stéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Depends: R (>= 2.10)
Imports: graphics, grDevices, methods, stats, utils
Suggests: ade4TkGUI, adegraphics, ape, CircStats, deldir, lattice,
maptools, MASS, pixmap, sp, spdep, splancs, waveslim
Description: Multivariate data analysis and graphical display.
License: GPL (>= 2)
URL: http://pbil.univ-lyon1.fr/ADE-4
http://listes.univ-lyon1.fr/wws/info/adelist
BugReports: https://github.com/sdray/ade4/issues
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2016-03-01 13:39:13 UTC; aurelie
Repository: CRAN
Date/Publication: 2016-03-01 17:07:34

● Cran Task View: Graphics, Spatial
● 0 images, 184 functions, 108 datasets
● Reverse Depends: 19

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ade4' ...
** package 'ade4' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c adesub.c -o adesub.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c divsub.c -o divsub.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c fourthcorner.c -o fourthcorner.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c phylog.c -o phylog.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c testamova.c -o testamova.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c testdim.c -o testdim.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c testrlq.c -o testrlq.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c tests.c -o tests.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ade4.so adesub.o divsub.o fourthcorner.o phylog.o testamova.o testdim.o testrlq.o tests.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ade4/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ade4'
    finding HTML links ... done
    EH                                      html  
    PI2newick                               html  
    RV.rtest                                html  
    RVdist.randtest                         html  
    abouheif.eg                             html  
    acacia                                  html  
    add.scatter                             html  
    ade4-deprecated                         html  
    ade4-internal                           html  
    ade4.package                            html  
    ade4toR                                 html  
    adegraphicsLoaded                       html  
    aminoacyl                               html  
    amova                                   html  
    apis108                                 html  
    apqe                                    html  
    aravo                                   html  
    ardeche                                 html  
    area.plot                               html  
    arrival                                 html  
    as.taxo                                 html  
    atlas                                   html  
    atya                                    html  
    avijons                                 html  
    avimedi                                 html  
    aviurba                                 html  
    bacteria                                html  
    banque                                  html  
    baran95                                 html  
    bca.rlq                                 html  
    between                                 html  
    betweencoinertia                        html  
    bf88                                    html  
    bicenter.wt                             html  
    bordeaux                                html  
    bsetal97                                html  
    buech                                   html  
    butterfly                               html  
    bwca.dpcoa                              html  
    cailliez                                html  
    capitales                               html  
    carni19                                 html  
    carni70                                 html  
    carniherbi49                            html  
    casitas                                 html  
    cca                                     html  
    chatcat                                 html  
    chats                                   html  
    chazeb                                  html  
    chevaine                                html  
    chickenk                                html  
    clementines                             html  
    cnc2003                                 html  
    coinertia                               html  
    coleo                                   html  
    combine.4thcorner                       html  
Rd warning: /tmp/RtmprJMYJ1/R.INSTALL3ec98bbb7af/ade4/man/combine.4thcorner.Rd:30: missing file link 'p.adjust.methods'
Rd warning: /tmp/RtmprJMYJ1/R.INSTALL3ec98bbb7af/ade4/man/combine.4thcorner.Rd:61: missing file link 'p.adjust.methods'
    corkdist                                html  
    corvus                                  html  
    costatis                                html  
    costatis.randtest                       html  
    deug                                    html  
    disc                                    html  
    discrimin                               html  
    discrimin.coa                           html  
    dist.binary                             html  
    dist.dudi                               html  
    dist.genet                              html  
    dist.ktab                               html  
    dist.neig                               html  
    dist.prop                               html  
    dist.quant                              html  
    divc                                    html  
    divcmax                                 html  
    dotchart.phylog                         html  
    dotcircle                               html  
    doubs                                   html  
    dpcoa                                   html  
    dudi                                    html  
    dudi.acm                                html  
    dudi.coa                                html  
    dudi.dec                                html  
    dudi.fca                                html  
    dudi.hillsmith                          html  
    dudi.mix                                html  
    dudi.nsc                                html  
    dudi.pca                                html  
    dudi.pco                                html  
    dunedata                                html  
    ecg                                     html  
    ecomor                                  html  
    elec88                                  html  
    escopage                                html  
    euro123                                 html  
    fission                                 html  
    foucart                                 html  
    fourthcorner                            html  
Rd warning: /tmp/RtmprJMYJ1/R.INSTALL3ec98bbb7af/ade4/man/fourthcorner.Rd:45: missing file link 'p.adjust.methods'
Rd warning: /tmp/RtmprJMYJ1/R.INSTALL3ec98bbb7af/ade4/man/fourthcorner.Rd:142: missing file link 'p.adjust.methods'
    friday87                                html  
    fruits                                  html  
    fuzzygenet                              html  
    gearymoran                              html  
    genet                                   html  
    ggtortoises                             html  
    granulo                                 html  
    gridrowcol                              html  
    hdpg                                    html  
    housetasks                              html  
    humDNAm                                 html  
    ichtyo                                  html  
    inertia.dudi                            html  
    irishdata                               html  
    is.euclid                               html  
    julliot                                 html  
    jv73                                    html  
    kcponds                                 html  
    kdist                                   html  
    kdist2ktab                              html  
    kdisteuclid                             html  
    kplot                                   html  
    kplot.foucart                           html  
    kplot.mcoa                              html  
    kplot.mfa                               html  
    kplot.pta                               html  
    kplot.sepan                             html  
    kplot.statis                            html  
    krandtest                               html  
    ktab                                    html  
    ktab.data.frame                         html  
    ktab.list.df                            html  
    ktab.list.dudi                          html  
    ktab.match2ktabs                        html  
    ktab.within                             html  
    lascaux                                 html  
    lingoes                                 html  
    lizards                                 html  
    macaca                                  html  
    macon                                   html  
    macroloire                              html  
    mafragh                                 html  
    mantel.randtest                         html  
    mantel.rtest                            html  
    maples                                  html  
    mariages                                html  
    mbpcaiv                                 html  
    mbpls                                   html  
    mcoa                                    html  
    mdpcoa                                  html  
    meau                                    html  
    meaudret                                html  
    mfa                                     html  
    microsatt                               html  
    mjrochet                                html  
    mld                                     html  
    mollusc                                 html  
    monde84                                 html  
    morphosport                             html  
    mstree                                  html  
    multiblock                              html  
    multispati                              html  
    multispati.randtest                     html  
    multispati.rtest                        html  
    neig                                    html  
    newick.eg                               html  
    newick2phylog                           html  
    niche                                   html  
    nipals                                  html  
    njplot                                  html  
    olympic                                 html  
    optimEH                                 html  
    oribatid                                html  
    originality                             html  
    orisaved                                html  
    orthobasis                              html  
    orthogram                               html  
    ours                                    html  
    palm                                    html  
    pap                                     html  
    pcaiv                                   html  
    pcaivortho                              html  
    pcoscaled                               html  
    pcw                                     html  
    perthi02                                html  
    phylog                                  html  
    piosphere                               html  
    plot.between                            html  
    plot.phylog                             html  
    plot.within                             html  
    presid2002                              html  
    procella                                html  
    procuste                                html  
    procuste.randtest                       html  
    procuste.rtest                          html  
    pta                                     html  
    quasieuclid                             html  
    randEH                                  html  
    randboot                                html  
    randboot.multiblock                     html  
    randtest                                html  
    randtest.amova                          html  
    randtest.between                        html  
    randtest.coinertia                      html  
    randtest.discrimin                      html  
    randtest.dpcoa                          html  
    randtest.pcaiv                          html  
    randxval                                html  
    rankrock                                html  
    reconst                                 html  
    rhizobium                               html  
    rhone                                   html  
    rlq                                     html  
    rpjdl                                   html  
    rtest                                   html  
    rtest.between                           html  
    rtest.discrimin                         html  
    s.arrow                                 html  
    s.chull                                 html  
    s.class                                 html  
    s.corcircle                             html  
    s.distri                                html  
    s.hist                                  html  
    s.image                                 html  
    s.kde2d                                 html  
    s.label                                 html  
    s.logo                                  html  
    s.match                                 html  
    s.match.class                           html  
    s.multinom                              html  
    s.traject                               html  
    s.value                                 html  
    santacatalina                           html  
    sarcelles                               html  
    scalewt                                 html  
    scatter                                 html  
    scatter.acm                             html  
    scatter.coa                             html  
    scatter.dudi                            html  
    scatter.fca                             html  
    scatterutil                             html  
    sco.boxplot                             html  
    sco.class                               html  
    sco.distri                              html  
    sco.gauss                               html  
    sco.label                               html  
    sco.match                               html  
    sco.quant                               html  
    score                                   html  
    score.acm                               html  
    score.coa                               html  
    score.mix                               html  
    score.pca                               html  
    seconde                                 html  
    sepan                                   html  
    skulls                                  html  
    statico                                 html  
    statico.krandtest                       html  
    statis                                  html  
    steppe                                  html  
    supcol                                  html  
    suprow                                  html  
    symbols.phylog                          html  
    syndicats                               html  
    t3012                                   html  
    table.cont                              html  
    table.dist                              html  
    table.paint                             html  
    table.phylog                            html  
    table.value                             html  
    tarentaise                              html  
    taxo.eg                                 html  
    testdim                                 html  
    testdim.multiblock                      html  
    tintoodiel                              html  
    tithonia                                html  
    tortues                                 html  
    toxicity                                html  
    triangle.class                          html  
    triangle.plot                           html  
    trichometeo                             html  
    ungulates                               html  
    uniquewt.df                             html  
    variance.phylog                         html  
    vegtf                                   html  
    veuvage                                 html  
    wca.rlq                                 html  
    westafrica                              html  
    within                                  html  
    withincoinertia                         html  
    withinpca                               html  
    witwit.coa                              html  
    woangers                                html  
    worksurv                                html  
    yanomama                                html  
    zealand                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (ade4)
Making 'packages.html' ... done

Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO