algstat

Package: algstat
Type: Package
Title: Algebraic statistics in R
Version: 0.0.2
Date: 2014-12-04
Authors@R: c(person("David", "Kahle", role = c("aut","cre"), email =
"david.kahle@gmail.com"), person("Luis", "Garcia-Puente", role = "aut",
email = "lgarcia@shsu.edu"))
Maintainer: David Kahle <david.kahle@gmail.com>
Description: algstat provides functionality for algebraic statistics in R.
Current applications include exact inference in log-linear models for
contingency table data, analysis of ranked and partially ranked data, and
general purpose tools for multivariate polynomials, building on the mpoly
package. To aid in the process, algstat has ports to Macaulay2, Bertini,
LattE-integrale and 4ti2.
Depends: mpoly
LinkingTo: Rcpp
Imports: stringr, reshape2, Rcpp
License: GPL-2
SystemRequirements: Optionally Latte-integrale, Bertini, and Macaulay2.
Cygwin is required for each of the above for Windows users. See
INSTALL file for details.
Packaged: 2014-12-06 01:17:27 UTC; david_kahle
Author: David Kahle [aut, cre],
Luis Garcia-Puente [aut]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-06 02:23:38

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'algstat' ...
** package 'algstat' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c computeCRsCpp.cpp -o computeCRsCpp.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c computeG2sCpp.cpp -o computeG2sCpp.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c computeNMsCpp.cpp -o computeNMsCpp.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c computeUProbsCpp.cpp -o computeUProbsCpp.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c computeX2sCpp.cpp -o computeX2sCpp.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c metropolisCpp.cpp -o metropolisCpp.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o algstat.so RcppExports.o computeCRsCpp.o computeG2sCpp.o computeNMsCpp.o computeUProbsCpp.o computeX2sCpp.o metropolisCpp.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/algstat/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'algstat'
    finding HTML links ... done
    Amaker                                  html  
    Emaker                                  html  
    Mmaker                                  html  
    Pmaker                                  html  
    Smaker                                  html  
    Tmaker                                  html  
    Umaker                                  html  
    abortion                                html  
    algstat                                 html  
    bertini                                 html  
    bump                                    html  
    city                                    html  
    condorcet                               html  
    cookie                                  html  
    count                                   html  
    countTables                             html  
    drugs                                   html  
    haberman                                html  
    handy                                   html  
    hierarchical                            html  
    hmat                                    html  
    is.bertini                              html  
    is.linear                               html  
    is.m2                                   html  
    kprod                                   html  
    latteMax                                html  
    finding level-2 HTML links ... done

    latteMin                                html  
    lower                                   html  
    lpnorm                                  html  
    m2                                      html  
    markov                                  html  
    mchoose                                 html  
    metropolis                              html  
    ones                                    html  
    politicalGoals                          html  
    politics                                html  
    polyOptim                               html  
    polySolve                               html  
    print.bertini                           html  
    print.hierarchical                      html  
    print.m2                                html  
    print.polyOptim                         html  
    print.spectral                          html  
    print.tableau                           html  
    projectOnto                             html  
    projectOntoPerp                         html  
    rvotes                                  html  
    setBertiniPath                          html  
    setLattePath                            html  
    setM2Path                               html  
    setMarkovPath                           html  
    spectral                                html  
    subsets                                 html  
    summary.bertini                         html  
    tab2vec                                 html  
    tableau                                 html  
    teshape                                 html  
    upper                                   html  
    variety                                 html  
    vec2tab                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (algstat)
Making 'packages.html' ... done