altcdfenvs

Package: altcdfenvs
Version: 2.34.0
Title: alternative CDF environments (aka probeset mappings)
Author: Laurent Gautier <lgautier@gmail.com>
Maintainer: Laurent Gautier <lgautier@gmail.com>
biocViews: Microarray, OneChannel, QualityControl, Preprocessing,
Annotation, ProprietaryPlatforms, Transcription
Depends: R (>= 2.7), methods, BiocGenerics (>= 0.1.0), S4Vectors (>=
0.9.25), Biobase (>= 2.15.1), affy, makecdfenv, Biostrings,
hypergraph
Suggests: plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db,
hgu133acdf, Rgraphviz, RColorBrewer
Description: Convenience data structures and functions to handle
cdfenvs
License: GPL (>= 2)
Collate: appendCdfEnvAffy.R buildCdfEnv.matchprobes.R
buildCdfEnv.biostrings.R CdfEnv.R cdfenvs.R copyCdfEnvAffy.R
readFASTA.R removeIndex.R unique.CdfEnvAffy.R
LazyLoad: yes
Packaged: 2016-05-04 02:41:48 UTC; biocbuild
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'altcdfenvs' ...
** R
** data
** inst
** preparing package for lazy loading
NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
in method for 'toHypergraph' with signature '"CdfEnvAffy"': no definition for class "CdfEnvAffy"
** help
*** installing help indices
  converting help for package 'altcdfenvs'
    finding HTML links ... done
    AffyProbesMatch-class                   html  
    CdfEnvAffy-class                        html  
    appendCdfEnvAffy                        html  
    buildCdfEnv.biostrings                  html  
    cdfenv                                  html  
    cdfenvEx                                html  
    copyCdfEnvAffy                          html  
    countduplicated                         html  
    geneNames                               html  
    getxy.probeseq                          html  
    index2xy                                html  
    indexProbes.CdfEnvAffy                  html  
    matchAffyProbes                         html  
    plot.CdfEnvAffy                         html  
    removeIndex                             html  
    toHypergraph                            html  
    unique.CdfEnvAffy                       html  
    utils.FASTA                             html  
    validAffyBatch                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (altcdfenvs)
Making 'packages.html' ... done