attract

Package: attract
Type: Package
Title: Methods to Find the Gene Expression Modules that Represent the
Drivers of Kauffman's Attractor Landscape
Version: 1.24.0
Date: 2016-03-15
Author: Jessica Mar
Maintainer: Samuel Zimmerman <sezimmer@einstein.yu.edu>
Description: This package contains the functions to find the gene
expression modules that represent the drivers of Kauffman's
attractor landscape. The modules are the core attractor
pathways that discriminate between different cell types of
groups of interest. Each pathway has a set of synexpression
groups, which show transcriptionally-coordinated changes in
gene expression.
License: LGPL (>= 2.0)
Collate: classdef.R findAttractorsStep.R removeFlatGenesStep.R
findSynexprsStep.R findFuncEnrichAndCorr.R
Depends: R (>= 3.2.4), methods, AnnotationDbi
Imports: Biobase, limma, cluster, GOstats, graphics, stats,
reactome.db, KEGGREST, org.Hs.eg.db
Suggests: illuminaHumanv1.db
biocViews: KEGG, Reactome, GeneExpression, Pathways, GeneSetEnrichment,
Microarray, RNASeq
NeedsCompilation: no
Packaged: 2016-05-04 03:41:03 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'attract' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'attract'
    finding HTML links ... done
    AttractorModuleSet-class                html  
    SynExpressionSet-class                  html  
    attract-package                         html  
    buildCorMatrix                          html  
    buildCustomIncidenceMatrix              html  
    buildKeggIncidenceMatrix                html  
    calcFuncSynexprs                        html  
    calcInform                              html  
    calcModfstat                            html  
    calcRss                                 html  
    exprs.dat                               html  
    filterDataSet                           html  
    findAttractors                          html  
    findCorrPartners                        html  
    findOnepwaySynexprs                     html  
    findSynexprs                            html  
    flagPwayExists                          html  
    getCustomGenes                          html  
    getPwayGenes                            html  
    loring.eset                             html  
    plotsynexprs                            html  
    removeFlatGenes                         html  
    samp.info                               html  
    subset.loring.eset                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (attract)
Making 'packages.html' ... done