baySeq

Package: baySeq
Type: Package
Title: Empirical Bayesian analysis of patterns of differential
expression in count data
Version: 2.6.0
Date: 2012-12-20
Depends: R (>= 2.3.0), methods, GenomicRanges, abind, perm
Suggests: edgeR, BiocStyle, BiocGenerics
Author: Thomas J. Hardcastle
Maintainer: Thomas J. Hardcastle <tjh48@cam.ac.uk>
Description: This package identifies differential expression in high-throughput 'count' data, such as that derived from next-generation sequencing machines, calculating estimated posterior likelihoods of differential expression (or more complex hypotheses) via empirical Bayesian methods.
License: GPL-3
LazyLoad: yes
biocViews: Sequencing, DifferentialExpression, MultipleComparison, SAGE
NeedsCompilation: no
Packaged: 2016-05-04 03:28:37 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'baySeq' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'baySeq'
    finding HTML links ... done
    CDPost                                  html  
    CDPriors                                html  
    allModels                               html  
    baySeq-classes                          html  
    baySeq-package                          html  
    bimodalSep                              html  
    densityFunction                         html  
    densityFunctions                        html  
    getLibsizes                             html  
    getLikelihoods                          html  
    getPosteriors                           html  
    getPriors                               html  
    getTPs                                  html  
    makeOrderings                           html  
    methObservables                         html  
    mobAnnotation                           html  
    mobData                                 html  
    pairData                                html  
    plotMA.CD                               html  
    plotNullPrior                           html  
    plotPosteriors                          html  
    plotPriors                              html  
    selectTop                               html  
    simData                                 html  
    summarisePosteriors                     html  
    topCounts                               html  
    zimData                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (baySeq)
Making 'packages.html' ... done