bdsmatrix

Package: bdsmatrix
Title: Routines for Block Diagonal Symmetric matrices
Maintainer: Terry Therneau <therneau@mayo.edu>
Version: 1.3-2
Date: 2014-08-22
Depends: methods, R (>= 2.0.0)
LazyData: Yes
LazyLoad: Yes
Author: Terry Therneau
Description: This is a special case of sparse matrices, used by coxme
License: LGPL-2
URL: http://r-forge.r-project.org
Collate: bdsmatrix.R gchol.R gchol.bdsmatrix.R as.matrix.bdsmatrix.R
bdsBlock.R bdsI.R bdsmatrix.ibd.R bdsmatrix.reconcile.R
diag.bdsmatrix.R listbdsmatrix.R multiply.bdsmatrix.R
solve.bdsmatrix.R solve.gchol.R solve.gchol.bdsmatrix.R
backsolve.R
Packaged: 2014-08-22 14:44:45 UTC; therneau
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-22 21:20:31

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'bdsmatrix' ...
** package 'bdsmatrix' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c R_init_bdsmatrix.c -o R_init_bdsmatrix.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bdsmatrix_index1.c -o bdsmatrix_index1.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bdsmatrix_index2.c -o bdsmatrix_index2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bdsmatrix_index3.c -o bdsmatrix_index3.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bdsmatrix_prod.c -o bdsmatrix_prod.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bdsmatrix_prod2.c -o bdsmatrix_prod2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bdsmatrix_prod3.c -o bdsmatrix_prod3.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bdsmatrix_prod4.c -o bdsmatrix_prod4.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c chinv4.c -o chinv4.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c chinv5.c -o chinv5.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c cholesky4.c -o cholesky4.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c cholesky5.c -o cholesky5.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c chsolve4.c -o chsolve4.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c chsolve5.c -o chsolve5.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c dmatrix.c -o dmatrix.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gcback.c -o gcback.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gchol.c -o gchol.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gchol_bds.c -o gchol_bds.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o bdsmatrix.so R_init_bdsmatrix.o bdsmatrix_index1.o bdsmatrix_index2.o bdsmatrix_index3.o bdsmatrix_prod.o bdsmatrix_prod2.o bdsmatrix_prod3.o bdsmatrix_prod4.o chinv4.o chinv5.o cholesky4.o cholesky5.o chsolve4.o chsolve5.o dmatrix.o gcback.o gchol.o gchol_bds.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/bdsmatrix/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'diag' from package 'base' in package 'bdsmatrix'
Creating a generic function for 'diag<-' from package 'base' in package 'bdsmatrix'
Creating a new generic function for 'backsolve' in package 'bdsmatrix'
** help
*** installing help indices
  converting help for package 'bdsmatrix'
    finding HTML links ... done
    as.matrix.bdsmatrix                     html  
    backsolve                               html  
    bdsBlock                                html  
    bdsI                                    html  
    bdsmatrix-class                         html  
    bdsmatrix                               html  
    bdsmatrix.ibd                           html  
    bdsmatrix.reconcile                     html  
    gchol-class                             html  
    gchol                                   html  
    gchol.bdsmatrix-class                   html  
    listbdsmatrix                           html  
    solve.bdsmatrix                         html  
    solve.gchol                             html  
** building package indices
** testing if installed package can be loaded
* DONE (bdsmatrix)
Making 'packages.html' ... done