bgafun

Package: bgafun
Type: Package
Title: BGAfun A method to identify specifity determining residues in
protein families
Version: 1.34.0
Date: 2007-08-03
Author: Iain Wallace
Maintainer: Iain Wallace <iain.wallace@ucd.ie>
Depends: made4, seqinr, ade4
Description: A method to identify specifity determining residues in
protein families using Between Group Analysis
License: Artistic-2.0
biocViews: Classification
NeedsCompilation: no
Packaged: 2016-05-04 03:03:26 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'bgafun' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'bgafun'
    finding HTML links ... done
    Calculate_Row_Weights                   html  
    Henikoff_weights                        html  
    LDH                                     html  
    LDH.aap                                 html  
    LDH.aap.ave                             html  
    LDH.amino                               html  
    LDH.amino.gapless                       html  
    LDH.amino.pseudo                        html  
    LDH.groups                              html  
    Weight_Amino                            html  
    add_pseudo_counts                       html  
    amino_counts                            html  
    average_cols_aap                        html  
    bgafun                                  html  
    calculate_pseudo                        html  
    convertAAP.package                      html  
    convert_aln_AAP                         html  
    convert_aln_amino                       html  
    convert_amino.package                   html  
    convert_seq_AAP                         html  
    convert_seq_amino                       html  
    create_colnames_AAP                     html  
    create_colnames_amino                   html  
    create_probab                           html  
    create_profile                          html  
    create_profile_strings                  html  
    pseudo_counts                           html  
    remove_gaps                             html  
    remove_gaps_groups                      html  
    run_between_pca                         html  
    sum_20_aln                              html  
    sum_20_cols                             html  
    sum_aln                                 html  
    top_residues_2_groups                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (bgafun)
Making 'packages.html' ... done