biglasso

Package: biglasso
Version: 1.0-1
Date: 2016-02-27
Title: Big Lasso: Extending Lasso Model Fitting to Big Data in R
Author: Yaohui Zeng [aut,cre], Patrick Breheny [ctb]
Maintainer: Yaohui Zeng <yaohui-zeng@uiowa.edu>
Description: Extend lasso and elastic-net model fitting for ultrahigh-dimensional, multi-gigabyte data sets that cannot be loaded into memory. Compared to existing lasso-fitting packages, it preserves equivalently fast computation speed but is much more memory-efficient, thus allowing for very powerful big data analysis even with only a single laptop.
License: GPL-2
Depends: bigmemory, Matrix, parallel, ncvreg
Imports: Rcpp (>= 0.12.1), methods
LinkingTo: Rcpp, RcppArmadillo, bigmemory, BH
NeedsCompilation: yes
Packaged: 2016-03-02 05:20:15 UTC; yazeng
Repository: CRAN
Date/Publication: 2016-03-02 11:10:15

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'biglasso' ...
** package 'biglasso' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/bigmemory/include" -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2  -c biglasso.c -o biglasso.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/bigmemory/include" -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2  -c binomial.c -o binomial.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/bigmemory/include" -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2  -c gaussian.c -o gaussian.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/bigmemory/include" -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2  -c maxprod_bm.c -o maxprod_bm.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/bigmemory/include" -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2  -c utilities.cpp -o utilities.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o biglasso.so biglasso.o binomial.o gaussian.o maxprod_bm.o utilities.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/biglasso/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'biglasso'
    finding HTML links ... done
    biglasso-internal                       html  
    biglasso-package                        html  
Rd warning: /tmp/RtmpUx20iR/R.INSTALL54585aeda597/biglasso/man/biglasso-package.Rd:25: missing file link 'as.big.matrix'
    biglasso                                html  
    cv.biglasso                             html  
    plot.biglasso                           html  
    plot.cv.biglasso                        html  
    predict.biglasso                        html  
    predict.cv.biglasso                     html  
    setupX                                  html  
    finding level-2 HTML links ... done

Rd warning: /tmp/RtmpUx20iR/R.INSTALL54585aeda597/biglasso/man/setupX.Rd:26: missing file link 'read.big.matrix'
Rd warning: /tmp/RtmpUx20iR/R.INSTALL54585aeda597/biglasso/man/setupX.Rd:30: missing file link 'read.big.matrix'
    summary.cv.biglasso                     html  
** building package indices
** testing if installed package can be loaded
* DONE (biglasso)
Making 'packages.html' ... done