biomaRt

Package: biomaRt
Version: 2.28.0
Title: Interface to BioMart databases (e.g. Ensembl, COSMIC ,Wormbase
and Gramene)
Author: Steffen Durinck <biomartdev@gmail.com>, Wolfgang Huber
Contributors: Sean Davis <sdavis2@mail.nih.gov>, Francois Pepin, Vince
S. Buffalo
Maintainer: Steffen Durinck <biomartdev@gmail.com>
Depends: methods
Imports: utils, XML, RCurl, AnnotationDbi
Suggests: annotate
biocViews: Annotation
Description: In recent years a wealth of biological data has become available in public data repositories. Easy access to these valuable data resources and firm integration with data analysis is needed for comprehensive bioinformatics data analysis. biomaRt provides an interface to a growing collection of databases implementing the BioMart software suite (http://www.biomart.org). The package enables retrieval of large amounts of data in a uniform way without the need to know the underlying database schemas or write complex SQL queries. Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt users direct access to a diverse set of data and enable a wide range of powerful online queries from gene annotation to database mining.
License: Artistic-2.0
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-05 01:33:03 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'biomaRt' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'biomaRt'
    finding HTML links ... done
    Mart-class                              html  
    NP2009code                              html  
    attributePages                          html  
    exportFASTA                             html  
    filterOptions                           html  
    filterType                              html  
    getBM                                   html  
    getBMlist                               html  
    getGene                                 html  
    getLDS                                  html  
    getSequence                             html  
    getXML                                  html  
    listAttributes                          html  
    listDatasets                            html  
    listEnsembl                             html  
    listFilters                             html  
    listMarts                               html  
    select                                  html  
    useDataset                              html  
    useEnsembl                              html  
    useMart                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (biomaRt)
Making 'packages.html' ... done