birta

Package: birta
Version: 1.16.0
Date: 2013-03-07
Title: Bayesian Inference of Regulation of Transcriptional Activity
Author: Benedikt Zacher, Khalid Abnaof, Stephan Gade, Erfan Younesi,
Achim Tresch, Holger Froehlich
Maintainer: Benedikt Zacher <zacher@lmb.uni-muenchen.de>, Holger
Froehlich <frohlich@bit.uni-bonn.de>
Depends: limma, MASS, R (>= 2.10), Biobase, methods
Description: Expression levels of mRNA molecules are regulated by
different processes, comprising inhibition or activation by
transcription factors and post-transcriptional degradation by
microRNAs. birta (Bayesian Inference of Regulation of
Transcriptional Activity) uses the regulatory networks of TFs
and miRNAs together with mRNA and miRNA expression data to
predict switches in regulatory activity between two conditions.
A Bayesian network is used to model the regulatory structure
and Markov-Chain-Monte-Carlo is applied to sample the activity
states.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2016-05-04 04:27:41 UTC; biocbuild
biocViews: Microarray, Sequencing, GeneExpression, Transcription,
GraphAndNetwork
NeedsCompilation: yes

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'birta' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c BayesNetwork.cpp -o BayesNetwork.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c BayesNetworkNC.cpp -o BayesNetworkNC.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c getStates.cpp -o getStates.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o birta.so BayesNetwork.o BayesNetworkNC.o getStates.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/birta/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'birta'
    finding HTML links ... done
    EColiNetwork                            html  
    EColiOxygen                             html  
    TFexpr                                  html  
    birta-methods                           html  
    birta-package                           html  
    birta.run                               html  
    genesets                                html  
    get_potential_swaps                     html  
    limmaAnalysis-methods                   html  
    limmaAnalysis                           html  
Rd warning: /tmp/RtmpeWf5WJ/R.INSTALLae25c156dcf/birta/man/limmaAnalysis.Rd:30: missing file link 'topTable'
    plotConvergence                         html  
Rd warning: /tmp/RtmpeWf5WJ/R.INSTALLae25c156dcf/birta/man/plotConvergence.Rd:17: missing file link 'birta'
    potential_swaps                         html  
    sim                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (birta)
Making 'packages.html' ... done