brglm

Package: brglm
Type: Package
Title: Bias reduction in binomial-response generalized linear models.
Version: 0.5-9
Date: 2013-11-08
Author: Ioannis Kosmidis <i.kosmidis@ucl.ac.uk>
Maintainer: Ioannis Kosmidis <i.kosmidis@ucl.ac.uk>
URL: http://www.ucl.ac.uk/~ucakiko/index.html
Description: Fit generalized linear models with binomial responses using either an adjusted-score approach to bias reduction or maximum penalized likelihood where penalization is by Jeffreys invariant prior. These procedures return estimates with improved frequentist properties (bias, mean squared error) that are always finite even in cases where the maximum likelihood estimates are infinite (data separation). Fitting takes place by fitting generalized linear models on iteratively updated pseudo-data. The interface is essentially the same as 'glm'. More flexibility is provided by the fact that custom pseudo-data representations can be specified and used for model fitting. Functions are provided for the construction of confidence intervals for the reduced-bias estimates.
License: GPL (>= 2)
Depends: R (>= 2.6.0), profileModel
Suggests: MASS
Packaged: 2013-11-08 10:15:36 UTC; yiannis
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-11-08 11:39:04

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'brglm' ...
** package 'brglm' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c hats.c -o hats.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o brglm.so hats.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/brglm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'brglm'
    finding HTML links ... done
    brglm                                   html  
    brglm.control                           html  
    confint.brglm                           html  
    gethats                                 html  
    glm.control1                            html  
    lizards                                 html  
    modifications                           html  
    plot.profile.brglm                      html  
    profile.brglm                           html  
    profileObjectives                       html  
Rd warning: /tmp/RtmpJe5AwB/R.INSTALL66ebfe540c8/brglm/man/profileObjectives.Rd:30: missing file link 'RaoScoreStatistic'
    separation.detection                    html  
** building package indices
** testing if installed package can be loaded
* DONE (brglm)
Making 'packages.html' ... done