bsseq

Package: bsseq
Version: 1.8.2
Title: Analyze, manage and store bisulfite sequencing data
Description: A collection of tools for analyzing and visualizing bisulfite
sequencing data.
Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("aut", "cre"),
email = "kasperdanielhansen@gmail.com"),
person("Peter", "Hickey", role = "ctb", email = "peter.hickey@gmail.com"))
Depends: R (>= 3.3), methods, BiocGenerics, GenomicRanges (>= 1.23.7),
SummarizedExperiment (>= 0.1.1), parallel, limma
Imports: IRanges (>= 2.5.17), GenomeInfoDb, scales, stats, graphics,
Biobase, locfit, gtools, data.table, S4Vectors, R.utils (>=
2.0.0), matrixStats (>= 0.50.0), permute
Suggests: RUnit, bsseqData, BiocStyle, knitr
Collate: hasGRanges.R BSseq_class.R BSseqTstat_class.R BSseq_utils.R
combine.R utils.R read.bsmooth.R read.bismark.R BSmooth.R
BSmooth.tstat.R dmrFinder.R gof_stats.R plotting.R fisher.R
permutations.R BSmooth.fstat.R BSseqStat_class.R getStats.R
License: Artistic-2.0
VignetteBuilder: knitr
URL: https://github.com/kasperdanielhansen/bsseq
LazyData: yes
LazyDataCompression: xz
BugReports: https://github.com/kasperdanielhansen/bsseq/issues
biocViews: DNAMethylation
NeedsCompilation: no
Packaged: 2016-05-16 03:31:45 UTC; biocbuild
Author: Kasper Daniel Hansen [aut, cre],
Peter Hickey [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'bsseq' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'bsseq'
    finding HTML links ... done
    BS.chr22                                html  
    BSmooth                                 html  
    BSmooth.fstat                           html  
    BSmooth.tstat                           html  
    BSseq-class                             html  
    finding level-2 HTML links ... done

    BSseq                                   html  
    BSseqStat-class                         html  
    BSseqTstat-class                        html  
    computeStat                             html  
    data.frame2GRanges                      html  
    dmrFinder                               html  
    fisherTests                             html  
    getCoverage                             html  
    getMeth                                 html  
    getStats                                html  
    goodnessOfFit                           html  
    hasGRanges-class                        html  
    internals                               html  
    plotRegion                              html  
    read.bismark                            html  
    read.bsmooth                            html  
    read.umtab                              html  
    smoothSds                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (bsseq)
Making 'packages.html' ... done