bumphunter

Package: bumphunter
Version: 1.12.0
Title: Bump Hunter
Description: Tools for finding bumps in genomic data
Authors@R: c(person(c("Rafael", "A."), "Irizarry", role = c("cre","aut"), email
= "rafa@jimmy.harvard.edu"), person("Martin", "Aryee", role = "aut"),
person(c("Kasper", "Daniel"), "Hansen", role = "aut"), person(c("Hector",
"Corrada"), "Bravo", role = "aut"), person("Shan", "Andrews", role =
"ctb"), person(c("Andrew", "E."), "Jaffe", role = "ctb"), person("Harris",
"Jaffee", role = "ctb"), person("Leonardo", "Collado-Torres", role="ctb"))
Depends: R (>= 2.10), S4Vectors (>= 0.9.25), IRanges (>= 2.3.23),
GenomeInfoDb, GenomicRanges, foreach, iterators, methods,
parallel, locfit
Suggests: testthat, RUnit, doParallel, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
Imports: matrixStats, limma, doRNG, BiocGenerics, utils,
GenomicFeatures, AnnotationDbi
License: Artistic-2.0
LazyData: yes
URL: https://github.com/ririzarr/bumphunter
biocViews: DNAMethylation, Epigenetics, Infrastructure,
MultipleComparison
NeedsCompilation: no
Packaged: 2016-05-04 04:47:38 UTC; biocbuild
Author: Rafael A. Irizarry [cre, aut],
Martin Aryee [aut],
Kasper Daniel Hansen [aut],
Hector Corrada Bravo [aut],
Shan Andrews [ctb],
Andrew E. Jaffe [ctb],
Harris Jaffee [ctb],
Leonardo Collado-Torres [ctb]
Maintainer: Rafael A. Irizarry <rafa@jimmy.harvard.edu>

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'bumphunter' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'bumphunter'
    finding HTML links ... done
    TT                                      html  
    annotateNearest                         html  
Rd warning: /tmp/RtmpBcIAWM/R.INSTALL77b43466ec1b/bumphunter/man/annotateNearest.Rd:31: missing file link 'nearest'
Rd warning: /tmp/RtmpBcIAWM/R.INSTALL77b43466ec1b/bumphunter/man/annotateNearest.Rd:34: missing file link 'nearest'
Rd warning: /tmp/RtmpBcIAWM/R.INSTALL77b43466ec1b/bumphunter/man/annotateNearest.Rd:59: missing file link 'nearest'
    annotateTranscripts                     html  
    bumphunter                              html  
    clusterMaker                            html  
    dummyData                               html  
    getSegments                             html  
    locfitByCluster                         html  
    loessByCluster                          html  
    matchGenes                              html  
Rd warning: /tmp/RtmpBcIAWM/R.INSTALL77b43466ec1b/bumphunter/man/matchGenes.Rd:41: missing file link 'nearest'
Rd warning: /tmp/RtmpBcIAWM/R.INSTALL77b43466ec1b/bumphunter/man/matchGenes.Rd:55: missing file link 'nearest'
    regionFinder                            html  
    runmedByCluster                         html  
    smoother                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (bumphunter)
Making 'packages.html' ... done