caOmicsV

Package: caOmicsV
Type: Package
Title: Visualization of multi-dimentional cancer genomics data
Version: 1.2.0
Date: 2015-04-28
Author: Henry Zhang
Maintainer: Henry Zhang <hzhang@mail.nih.gov>
Description: caOmicsV package provides methods to visualize
multi-dimentional cancer genomics data including of patient
information, gene expressions, DNA methylations, DNA copy
number variations, and SNP/mutations in matrix layout or
network layout.
License: GPL (>=2.0)
Depends: R (>= 3.2), igraph (>= 0.7.1), bc3net (>= 1.0.2)
biocViews: Visualization, Network, RNASeq
NeedsCompilation: no
Packaged: 2016-05-04 06:20:50 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'caOmicsV' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'caOmicsV'
    finding HTML links ... done
    CA_OMICS_ENV                            html  
    CA_OMICS_NAME                           html  
    CA_OMICS_NA_STRING                      html  
    CNVDemoData                             html  
    RNA2miRNA                               html  
    RNASeq                                  html  
    RNASeqDemoData                          html  
    bioMatrixLegend                         html  
    bioNetCircosPlot                        html  
    bioNetLegend                            html  
    biomatrixPlotDemoData                   html  
    bionetPlotDemoData                      html  
    caOmicsV-package                        html  
    convertToZScores                        html  
    drawBioNetNodeBackground                html  
    eraseBioNetNode                         html  
    getBezierCurve                          html  
    getBioMatrixDataRowTop                  html  
    getBioMatrixPlotParameters              html  
    getBioNetNodeLinkLine                   html  
    getBioNetParameters                     html  
    getBioNetPlotLocations                  html  
    getBioNetSamplePlotPosition             html  
    getCaOmicsVColors                       html  
    getCaOmicsVPlotTypes                    html  
    getDefaultNaStrings                     html  
    getHeatmapColorScales                   html  
    getPlotDataSet                          html  
    getPlotOmicsData                        html  
    getPlotSampleData                       html  
    getPlotSummaryData                      html  
    getRelatedPlotData                      html  
    initializeBioMatrixPlot                 html  
    initializeBioNetCircos                  html  
    labelBioNetNodeNames                    html  
    linkBioNetNodes                         html  
    linkBioNetSamples                       html  
    methylDemoData                          html  
    miRNA                                   html  
    miRNADemoData                           html  
    plotBioMatrix                           html  
    plotBioMatrixBars                       html  
    plotBioMatrixBinaryData                 html  
    plotBioMatrixCategoryData               html  
    plotBioMatrixHeatmap                    html  
    plotBioMatrixRowNames                   html  
    plotBioMatrixSampleData                 html  
    plotBioMatrixSampleNames                html  
    plotBioNetBars                          html  
    plotBioNetCircos                        html  
    plotBioNetHeatmap                       html  
    plotBioNetLines                         html  
    plotBioNetPoints                        html  
    plotBioNetPolygons                      html  
    plotHeatmapColorScale                   html  
    resetBioNetNodePlotAreaBoundary         html  
    sampleDemoData                          html  
    setBioMatrixBaseCoordinates             html  
    setBioMatrixPlotArea                    html  
    setBioMatrixPlotParameters              html  
    setBioNetCircosBasePlotPositions        html  
    setBioNetNodeLayout                     html  
    setBioNetPlotAreaBackground             html  
    setBioNetPlotParameters                 html  
    setCaOmicsVColors                       html  
    setDefaultNaStrings                     html  
    showBioMatrixPlotLayout                 html  
    showBioNetNodesLayout                   html  
    showSupportedBioNetCircosPlotType       html  
    sortClinicalData                        html  
    sortOmicsDataByColumn                   html  
    sortOmicsDataByRow                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (caOmicsV)
Making 'packages.html' ... done