chipenrich

Package: chipenrich
Type: Package
Title: Gene Set Enrichment For ChIP-seq Peak Data
Version: 1.10.0
Date: 2015-10-01
Authors@R: c(
person(c("Ryan","P."),"Welch",role = c("aut","cph"),email = "welchr@umich.edu"),
person("Chee","Lee",role = c("aut","cre"),email = "cheelee@umich.edu"),
person(c("Raymond","G."),"Cavalcante",role = c("aut","cre"),email = "rcavalca@umich.edu"),
person(c("Laura","J."),"Scott",role = c("ths"), email = "ljst@umich.edu"),
person(c("Maureen","A."),"Sartor",role = c("ths"),email = "sartorma@med.umich.edu"))
Description: ChIP-Enrich performs gene set enrichment testing
using peaks called from a ChIP-seq experiment. The method empirically
corrects for confounding factors such as the length of genes,
and the mappability of the sequence surrounding genes.
biocViews: Software, Bioinformatics, Enrichment, GeneSetEnrichment
License: GPL-3
Imports: chipenrich.data, methods, GenomicRanges (>= 1.10.0), IRanges
(>= 1.16.0), mgcv, plyr (>= 1.7.0), lattice, latticeExtra,
grid, stringr (>= 0.6), rms
Suggests: testthat
Depends: R (>= 2.15.1)
Enhances: parallel
LazyLoad: yes
Author: Ryan P. Welch [aut, cre, cph],
Chee Lee [aut, cre],
Raymond G. Cavalcante [aut, cre],
Laura J. Scott [ths],
Maureen A. Sartor [ths]
Maintainer: Raymond G. Cavalcante <rcavalca@umich.edu>, Chee Lee <cheelee@umich.edu>
NeedsCompilation: no
Packaged: 2016-05-04 05:06:31 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'chipenrich' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'chipenrich'
    finding HTML links ... done
    chipenrich                              html  
    plot_dist_to_tss                        html  
    plot_expected_peaks                     html  
    plot_gene_coverage                      html  
    plot_spline_length                      html  
    supported_genesets                      html  
    supported_genomes                       html  
    supported_locusdefs                     html  
    supported_methods                       html  
    supported_read_lengths                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (chipenrich)
Making 'packages.html' ... done