Last data update: 2014.03.03
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chipseq
Package: chipseq
Title: chipseq: A package for analyzing chipseq data
Version: 1.22.0
Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao
Description: Tools for helping process short read data for chipseq
experiments
Depends: R (>= 2.10), methods, BiocGenerics (>= 0.1.0), S4Vectors (>=
0.9.25), IRanges (>= 1.99.1), GenomicRanges (>= 1.17.7),
ShortRead
Imports: methods, stats, lattice, BiocGenerics, IRanges, GenomicRanges,
ShortRead
Suggests: BSgenome, GenomicFeatures, TxDb.Mmusculus.UCSC.mm9.knownGene
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
License: Artistic-2.0
LazyLoad: yes
biocViews: ChIPSeq, Sequencing, Coverage, QualityControl, DataImport
NeedsCompilation: yes
Packaged: 2016-05-04 03:17:00 UTC; biocbuild
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'chipseq' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rlesumprod.c -o rlesumprod.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o chipseq.so rlesumprod.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/chipseq/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'chipseq'
finding HTML links ... done
chipseqFilter html
coverageplot html
cstest html
diffPeakSummary html
estimate.mean.fraglen html
Rd warning: /tmp/RtmpY6uu29/R.INSTALL7a6829112ad1/chipseq/man/estimate.mean.fraglen.Rd:56: missing file link 'IntegerList-class'
islandDepthPlot html
Rd warning: /tmp/RtmpY6uu29/R.INSTALL7a6829112ad1/chipseq/man/islandDepthPlot.Rd:17: missing file link 'RleList-class'
laneSubsample html
peakCutoff html
Rd warning: /tmp/RtmpY6uu29/R.INSTALL7a6829112ad1/chipseq/man/peakCutoff.Rd:17: missing file link 'RleList-class'
peakSummary-methods html
subsetSummary html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (chipseq)
Making 'packages.html' ... done
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