chroGPS

Package: chroGPS
Type: Package
Title: chroGPS: visualizing the epigenome
Version: 1.16.0
Date: 2015-04-20
Author: Oscar Reina, David Rossell
Maintainer: Oscar Reina <oscar.reina@irbbarcelona.org>
Description: We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.
License: GPL (>=2.14)
Depends: R (>= 2.13.0), IRanges, methods, Biobase, MASS, graphics,
stats, changepoint
#Imports: graphics, cluster, DPpackage, ICSNP
Imports: cluster, DPpackage, ICSNP
Enhances: parallel, XML, rgl
Collate: adjustPeaks.R distGPS.R domainDist.R mds-class.R mds.R
procrustesAdj.R clusGPS.R geneSetGPS.R getmodEncode.R
gff2RDList.R gps2xgmml.R
LazyLoad: yes
biocViews: Visualization, Clustering
NeedsCompilation: no
Packaged: 2016-05-04 04:47:07 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'chroGPS' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'chroGPS'
    finding HTML links ... done
    addVar                                  html  
    adjustPeaks                             html  
    boostMDS                                html  
    clusGPS-class                           html  
    clusGPS                                 html  
    distGPS-class                           html  
    distGPS                                 html  
    domainDist                              html  
    geneSetGPS                              html  
    getURL                                  html  
    gff2RDList                              html  
    gps2xgmml                               html  
    mds-class                               html  
    mds                                     html  
    mergeClusters                           html  
    procrustesAdj                           html  
    profileClusters                         html  
    s2                                      html  
    splitDistGPS-class                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (chroGPS)
Making 'packages.html' ... done