circlize

Package: circlize
Type: Package
Title: Circular Visualization
Version: 0.3.7
Date: 2016-5-15
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Depends: R (>= 2.10.0), graphics
Imports: GlobalOptions (>= 0.0.10), shape, grDevices, utils, stats,
colorspace, methods, grid
Suggests: knitr, dendextend (>= 1.0.1)
VignetteBuilder: knitr
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here the circlize package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of this package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
circlize gives users more convenience and freedom to design figures for
better understanding complex patterns behind multi-dimensional data.
URL: https://github.com/jokergoo/circlize
License: GPL (>= 2)
Packaged: 2016-05-15 13:02:39 UTC; jokergoo
Repository: CRAN
Date/Publication: 2016-05-15 21:50:44
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'circlize' ...
** package 'circlize' successfully unpacked and MD5 sums checked
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'circlize'
    finding HTML links ... done
    adjacencyList2Matrix                    html  
    chordDiagram                            html  
    chordDiagramFromDataFrame               html  
    chordDiagramFromMatrix                  html  
    circlize-package                        html  
    circlize                                html  
    circos.axis                             html  
    circos.clear                            html  
    circos.dendrogram                       html  
    circos.genomicDensity                   html  
    circos.genomicInitialize                html  
    circos.genomicLines                     html  
    circos.genomicLink                      html  
    circos.genomicPoints                    html  
    circos.genomicPosTransformLines         html  
    circos.genomicRainfall                  html  
    circos.genomicRect                      html  
    circos.genomicText                      html  
    circos.genomicTrack                     html  
    circos.genomicTrackPlotRegion           html  
    circos.info                             html  
    circos.initialize                       html  
    circos.initializeWithIdeogram           html  
    circos.lines                            html  
    circos.link                             html  
    circos.par                              html  
    circos.points                           html  
    circos.polygon                          html  
    circos.rect                             html  
    circos.segments                         html  
    circos.text                             html  
    circos.track                            html  
    circos.trackHist                        html  
    circos.trackLines                       html  
    circos.trackPlotRegion                  html  
    circos.trackPoints                      html  
    circos.trackText                        html  
    circos.update                           html  
    circos.updatePlotRegion                 html  
    circos.xaxis                            html  
    circos.yaxis                            html  
    col2value                               html  
    colorRamp2                              html  
    cytoband.col                            html  
    degree                                  html  
    draw.sector                             html  
    generateRandomBed                       html  
    genomicDensity                          html  
    get.all.sector.index                    html  
    get.all.track.index                     html  
    get.cell.meta.data                      html  
    get.current.chromosome                  html  
    getI                                    html  
    highlight.chromosome                    html  
    highlight.sector                        html  
    posTransform.default                    html  
    posTransform.text                       html  
    rainfallTransform                       html  
    rand_color                              html  
    read.chromInfo                          html  
    read.cytoband                           html  
    reverse.circlize                        html  
    show.index                              html  
    smartAlign                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (circlize)
Making 'packages.html' ... done