clonotypeR

Package: clonotypeR
Type: Package
Title: High throughput analysis of T cell antigen receptor sequences
Version: 1.10.2
Date: 2016-04-23
Author: Charles Plessy <plessy@riken.jp>
Maintainer: Charles Plessy <plessy@riken.jp>
Description: High throughput analysis of T cell antigen receptor sequences
The genes encoding T cell receptors are created by somatic recombination,
generating an immense combination of V, (D) and J segments. Additional
processes during the recombination create extra sequence diversity between the
V an J segments. Collectively, this hyper-variable region is called the CDR3
loop.
.
The purpose of this package is to process and quantitatively analyse millions
of V-CDR3-J combination, called clonotypes, from multiple sequence libraries.
License: file LICENSE
Imports: methods
Suggests: BiocGenerics, edgeR, knitr, pvclust, RUnit, vegan
VignetteBuilder: knitr
Packaged: 2016-05-16 03:54:24 UTC; biocbuild
biocViews: Sequencing
URL: http://clonotyper.branchable.com/
BugReports: http://clonotyper.branchable.com/Bugs/
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'clonotypeR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'clonotypeR'
    finding HTML links ... done
    clonotype_table                         html  
    clonotyper_extdata                      html  
    common_clonotypes                       html  
    is_unproductive                         html  
    private_clonotypes                      html  
    read_clonotypes                         html  
    unique_clonotypes                       html  
    yassai_identifier                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (clonotypeR)
Making 'packages.html' ... done