codelink

Package: codelink
Version: 1.40.2
Date: 2016-03-15
Title: Manipulation of Codelink microarray data
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
Depends: R (>= 2.10), BiocGenerics (>= 0.3.2), methods, Biobase (>=
2.17.8), limma
Imports: annotate
Suggests: genefilter, parallel, knitr
LazyLoad: yes
Description: This package facilitates reading, preprocessing and manipulating
Codelink microarray data. The raw data must be exported as text file using the
Codelink software.
License: GPL-2
Collate: Codelink-class.R CodelinkSet-class.R file.R data.R norm.R
plot.R CodelinkSet-methods.R CodelinkSet-tools.R
CodelinkSetUnique-class.R CodelinkSetUnique-methods.R filter.R
cluster.R
biocViews: Microarray, OneChannel, DataImport, Preprocessing
ByteCompile: yes
VignetteBuilder: knitr
URL: https://github.com/ddiez/codelink
BugReports: https://github.com/ddiez/codelink/issues
NeedsCompilation: no
Packaged: 2016-05-16 01:37:15 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'codelink' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'codelink'
** help
*** installing help indices
  converting help for package 'codelink'
    finding HTML links ... done
    Codelink-class                          html  
    CodelinkSet-class                       html  
    finding level-2 HTML links ... done

    CodelinkSetUnique-class                 html  
    Nondocumented-objects                   html  
    SNR                                     html  
    arrayNew                                html  
    arraySize                               html  
    as.matrix.Codelink                      html  
    averageProbes                           html  
    bkgdCorrect                             html  
    codPlot                                 html  
    codelink.example                        html  
    codset                                  html  
    createWeights                           html  
    cutCV                                   html  
    decDetect                               html  
    dim.Codelink                            html  
    fc2Cond                                 html  
    imageCodelink                           html  
    logCodelink                             html  
    mergeArray                              html  
    na2false                                html  
    normalize                               html  
    plotCV                                  html  
    plotCorrelation                         html  
    plotDensities                           html  
    plotMA                                  html  
    printHead                               html  
    readCodelink                            html  
    readHeader                              html  
    readHeaderXLS                           html  
    reportCodelink                          html  
    selCV                                   html  
    writeCodelink                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (codelink)
Making 'packages.html' ... done