compEpiTools

Package: compEpiTools
Type: Package
Title: Tools for computational epigenomics
Version: 1.6.3
Date: 2016-05-25
Author: Mattia Pelizzola, Kamal Kishore
Maintainer: Kamal Kishore <kamal.fartiyal84@gmail.com>
Description: Tools for computational epigenomics developed for the analysis, integration and simultaneous
visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.
License: GPL
LazyLoad: yes
Imports: AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel,
grDevices, gplots, IRanges, GenomicFeatures, XVector,
methylPipe, GO.db, S4Vectors, GenomeInfoDb, ggplot2
Depends: R (>= 3.1.1), methods, topGO, GenomicRanges
Suggests: BSgenome.Mmusculus.UCSC.mm9,
TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr,
rtracklayer
VignetteBuilder: knitr
biocViews: GeneExpression, Sequencing, Visualization, GenomeAnnotation,
Coverage
NeedsCompilation: no
Packaged: 2016-05-26 04:44:53 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'compEpiTools' ...
** R
** inst
** preparing package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
  converting help for package 'compEpiTools'
    finding HTML links ... done
    GR2fasta-methods                        html  
    GRanges2ucsc-methods                    html  
    GRangesInPromoters-methods              html  
    GRannotate-methods                      html  
    GRannotateSimple                        html  
    GRbaseCoverage-methods                  html  
    GRcoverage-methods                      html  
    GRcoverageSummit-methods                html  
    GRenrichment-methods                    html  
    GRmidpoint-methods                      html  
    GRsetwidth                              html  
    TSS                                     html  
    compEpiTools-package                    html  
    countOverlapsInBins-methods             html  
    distanceFromTSS-methods                 html  
    enhancers                               html  
    findLncRNA                              html  
    getPromoterClass-methods                html  
    finding level-2 HTML links ... done

    heatmapData                             html  
    heatmapPlot                             html  
    makeGtfFromDb                           html  
    matchEnhancers                          html  
    overlapOfGRanges-methods                html  
    palette2d                               html  
    plotStallingIndex                       html  
    simplifyGOterms                         html  
    stallingIndex                           html  
    topGOres                                html  
    ucsc2GRanges                            html  
    unionMaxScore-methods                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* DONE (compEpiTools)
Making 'packages.html' ... done