compareGroups

Package: compareGroups
Type: Package
Title: Descriptive Analysis by Groups
Version: 3.2.1
Date: 2016-05-13
Depends: R (>= 2.13.1), Hmisc, gdata, xtable, SNPassoc
Imports: survival, epitools, tools, HardyWeinberg, rmarkdown, knitr
Suggests: tcltk2, car, shiny, shinyBS, shinyjs, DT, xlsx
Author: Isaac Subirana, Joan Vila, Héctor Sanz, Gavin Lucas, Judith Peñafiel and David Giménez
Maintainer: Isaac Subirana <isubirana@imim.es>
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Perform figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotids Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
License: GPL (>= 2)
URL: http://www.comparegroups.eu
LazyLoad: yes
Encoding: latin1
BuildVignettes: True
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-05-13 10:51:22 UTC; isubirana
Repository: CRAN
Date/Publication: 2016-05-14 00:10:24

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'compareGroups' ...
** package 'compareGroups' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'compareGroups'
    finding HTML links ... done
    cGroupsGUI                              html  
    cGroupsWUI                              html  
    compareGroups-internal                  html  
    compareGroups-package                   html  
    compareGroups                           html  
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareGroups.Rd:37: missing file link '.GlobalEnv'
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareGroups.Rd:58: missing file link 'na.pass'
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareGroups.Rd:58: missing file link 'na.exclude'
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareGroups.Rd:96: missing file link 'bmp'
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareGroups.Rd:96: missing file link 'jpeg'
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareGroups.Rd:96: missing file link 'tiff'
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareGroups.Rd:155: missing file link 'bmp'
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareGroups.Rd:155: missing file link 'jpeg'
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareGroups.Rd:155: missing file link 'tiff'
    compareSNPs                             html  
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareSNPs.Rd:26: missing file link 'na.pass'
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/compareSNPs.Rd:26: missing file link 'na.exclude'
    createTable                             html  
    export2csv                              html  
    export2html                             html  
    export2latex                            html  
    export2md                               html  
    export2pdf                              html  
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/export2pdf.Rd:22: missing file link 'texi2pdf'
    export2word                             html  
    export2xls                              html  
    getResults                              html  
    missingTable                            html  
    predimed                                html  
    printTable                              html  
    radiograph                              html  
    regicor                                 html  
    report                                  html  
Rd warning: /tmp/Rtmp5UAbYP/R.INSTALL59144b4df2d/compareGroups/man/report.Rd:25: missing file link 'texi2pdf'
    varinfo                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (compareGroups)
Making 'packages.html' ... done