Last data update: 2014.03.03

compositions

Package: compositions
Version: 1.40-1
Date: 2013-06-01
Title: Compositional Data Analysis
Author: K. Gerald van den Boogaart <boogaart@hzdr.de>,
Raimon Tolosana, Matevz Bren
Maintainer: K. Gerald van den Boogaart <support@boogaart.de>
Depends: R (>= 2.2.0), tensorA, robustbase, energy, bayesm
Suggests: rgl
Description: The package provides functions for the consistent analysis of
compositional data (e.g. portions of substances) and positive numbers
(e.g. concentrations) in the way proposed by Aitchison and Pawlowsky-Glahn.
License: GPL (>= 2)
URL: http://www.stat.boogaart.de/compositions
Packaged: 2014-06-06 15:58:33 UTC; tolosa53
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-06-07 21:11:09

● 0 images, 170 functions, 29 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'compositions' ...
** package 'compositions' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c compositions.c -o compositions.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o compositions.so compositions.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/compositions/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'compositions'
    finding HTML links ... done
    Activity10                              html  
    Activity31                              html  
    AnimalVegetation                        html  
    ArcticLake                              html  
    Bayesite                                html  
    Blood23                                 html  
    Boxite                                  html  
    ClamEast                                html  
    ClamWest                                html  
    CompLinModCo                            html  
    ConfRadius                              html  
    Coxite                                  html  
    DiagnosticProb                          html  
    Firework                                html  
    Glacial                                 html  
    Hongite                                 html  
    HotellingsTsq                           html  
    HouseholdExp                            html  
    Hydrochem                               html  
    Kongite                                 html  
    Metabolites                             html  
    PogoJump                                html  
    R2                                      html  
    Sediments                               html  
    SerumProtein                            html  
    ShiftOperators                          html  
    SimulatedAmounts                        html  
    Skulls                                  html  
    SkyeAFM                                 html  
    Supervisor                              html  
    WhiteCells                              html  
    Yatquat                                 html  
    acomp                                   html  
    acomparith                              html  
    acompmargin                             html  
    alr                                     html  
    aplus                                   html  
    aplusarithm                             html  
    apt                                     html  
    arrows3d                                html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/arrows3d.Rd:19: missing file link 'rgl.material'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/arrows3d.Rd:47: missing file link 'points3d'
    asdataframe                             html  
    axis3d                                  html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/axis3d.Rd:31: missing file link 'rgl.material'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/axis3d.Rd:44: missing file link 'points3d'
    balancebase                             html  
    barplot                                 html  
    binary                                  html  
    biplot3d                                html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/biplot3d.Rd:34: missing file link 'rgl.material'
    boxplot                                 html  
    ccomp                                   html  
    ccompgof                                html  
    cdt                                     html  
    clo                                     html  
    clr                                     html  
    clr2ilr                                 html  
    clusterfinder                           html  
    codadendrogram                          html  
    coloredbiplot                           html  
    colorsforoutliers                       html  
    compOKriging                            html  
    compmiss                                html  
    compositions                            html  
    cor                                     html  
    cpt                                     html  
    dist                                    html  
    ellipses                                html  
    endmemberCoordinates                    html  
    fitdirichlet                            html  
    fitsamemean                             html  
    gausstest                               html  
    geometricmean                           html  
    getdetectionlimit                       html  
    goftests                                html  
    groupparts                              html  
    gsiPrinBal                              html  
    gsiadd                                  html  
    gsiaddclass                             html  
    gsicall                                 html  
    gsiclosespread                          html  
    gsicoorinfo                             html  
    gsicsum                                 html  
    gsidiagExtract                          html  
    gsidiagGenerate                         html  
    gsidrop                                 html  
    gsieps                                  html  
    gsieq                                   html  
    gsiexpandrcomp                          html  
    gsifiltercall                           html  
    gsigetD                                 html  
    gsigetbalstruct                         html  
    gsiinternal                             html  
    gsiinvperm                              html  
    gsiisSingleRow                          html  
    gsimap01                                html  
    gsimargin                               html  
    gsimerge2signary                        html  
    gsipairrelativeMatrix                   html  
    gsipairs                                html  
    gsiplain                                html  
    gsiplotmargin                           html  
    gsirecode                               html  
    gsireset3d                              html  
    gsisimshape                             html  
    gsispreadToIsoSpace                     html  
    gsisvdsolve                             html  
    gsitextpanel                            html  
    gsivarwithlosts                         html  
    idt                                     html  
    iit                                     html  
    ilr                                     html  
    ilrBase                                 html  
    ilt                                     html  
    ipt                                     html  
    isAcomp                                 html  
    ismahalanobisoutlier                    html  
    isoportion                              html  
    jura                                    html  
    kingtetrahedron                         html  
    lines                                   html  
    logratioVariogram                       html  
    lrvgram                                 html  
    mahalanobisdist                         html  
    matmult                                 html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/matmult.Rd:24: missing file link '%*%'
    matmultacomp                            html  
    meanAcomp                               html  
    meanrow                                 html  
    missingProjector                        html  
    missingsummary                          html  
    mix2compositions                        html  
    mixRead                                 html  
    mvar                                    html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/mvar.Rd:27: missing file link 'var'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/mvar.Rd:28: missing file link 'cov'
    names                                   html  
    norm                                    html  
    normalize                               html  
    oneOrDataset                            html  
    outlierclassifier                       html  
    outlierplot                             html  
    outliers                                html  
    pairwisePlot                            html  
    finding level-2 HTML links ... done

    parametricMat                           html  
    perturbe                                html  
    plot                                    html  
    plot3d                                  html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3d.Rd:16: missing file link 'rgl.material'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3d.Rd:36: missing file link 'points3d'
    plot3dacomp                             html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3dacomp.Rd:24: missing file link 'rgl.material'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3dacomp.Rd:77: missing file link 'points3d'
    plot3daplus                             html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3daplus.Rd:17: missing file link 'rgl.material'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3daplus.Rd:40: missing file link 'points3d'
    plot3drmult                             html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3drmult.Rd:16: missing file link 'rgl.material'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3drmult.Rd:40: missing file link 'points3d'
    plot3drplus                             html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3drplus.Rd:15: missing file link 'rgl.material'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/plot3drplus.Rd:35: missing file link 'points3d'
    plotlogratioVariogram                   html  
    plotmissingsummary                      html  
    plotpos                                 html  
    powerofmatrix                           html  
    princompacomp                           html  
    princompaplus                           html  
    princomprcomp                           html  
    princomprmult                           html  
    princomprplus                           html  
    print                                   html  
    pwlrPlot                                html  
    qqnorm                                  html  
    rDirichlet                              html  
    raitchison                              html  
    ratioLoadings                           html  
    rcomp                                   html  
    rcomparithm                             html  
    rcompmargin                             html  
    readgeoeas                              html  
    replot                                  html  
    rlnorm                                  html  
    rmahalanobis                            html  
    rmult                                   html  
    rmultarithm                             html  
    rmultmatmult                            html  
    rnorm                                   html  
    robustness                              html  
    rplus                                   html  
    rplusarithm                             html  
    rpois                                   html  
    runif                                   html  
    scalar                                  html  
    scale                                   html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/scale.Rd:54: missing file link 'scale.default'
    segments                                html  
    simplemissingplot                       html  
    simulatemissing                         html  
    split                                   html  
    straight                                html  
    summaryAcomp                            html  
    summaryAplus                            html  
    summaryRcomp                            html  
    sumprojector                            html  
    ternaryAxis                             html  
    tests                                   html  
    totals                                  html  
    tryDebugger                             html  
    ult                                     html  
    varAcomp                                html  
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/varAcomp.Rd:51: missing file link 'var'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/varAcomp.Rd:52: missing file link 'var'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/varAcomp.Rd:53: missing file link 'cov'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/varAcomp.Rd:54: missing file link 'var'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/varAcomp.Rd:71: missing file link 'var'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/varAcomp.Rd:72: missing file link 'cov'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/varAcomp.Rd:89: missing file link 'var'
Rd warning: /tmp/RtmpQTLWCg/R.INSTALL460652f44aa5/compositions/man/varAcomp.Rd:90: missing file link 'cov'
    variation                               html  
    variograms                              html  
    varmlm                                  html  
    vcovAcomp                               html  
    vgmFit                                  html  
    zeroreplace                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (compositions)
Making 'packages.html' ... done

Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO