copa

Package: copa
Title: Functions to perform cancer outlier profile analysis.
Version: 1.40.0
Date: 2006-01-26
Author: James W. MacDonald
Maintainer: James W. MacDonald <jmacdon@u.washington.edu>
Description: COPA is a method to find genes that undergo recurrent fusion
in a given cancer type by finding pairs of genes that have
mutually exclusive outlier profiles.
Depends: Biobase, methods
Suggests: colonCA
License: Artistic-2.0
LazyLoad: yes
biocViews: OneChannel, TwoChannel, DifferentialExpression,
Visualization
NeedsCompilation: yes
Packaged: 2016-05-04 02:50:45 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'copa' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c copa.c -o copa.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o copa.so copa.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/copa/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'copa'
    finding HTML links ... done
    copa                                    html  
    copa.package                            html  
    copaFilter                              html  
    copaPerm                                html  
    copaTable                               html  
    getans                                  html  
    pSum                                    html  
    perm.mat                                html  
    plotCopa                                html  
    scatterPlotCopa                         html  
    summaryCopa                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (copa)
Making 'packages.html' ... done