copynumber

Package: copynumber
Title: Segmentation of single- and multi-track copy number data by
penalized least squares regression.
Version: 1.12.0
Author: Gro Nilsen, Knut Liestoel and Ole Christian Lingjaerde.
Maintainer: Gro Nilsen <gronilse@ifi.uio.no>
Description: Penalized least squares regression is applied to fit
piecewise constant curves to copy number data to locate genomic
regions of constant copy number. Procedures are available for
individual segmentation of each sample, joint segmentation of
several samples and joint segmentation of the two data tracks
from SNP-arrays. Several plotting functions are available for
visualization of the data and the segmentation results.
License: Artistic-2.0
LazyData: yes
Date: 2013-04-16
BuildResaveData: best
Depends: R (>= 2.10), BiocGenerics
Imports: S4Vectors, IRanges, GenomicRanges
biocViews: aCGH, SNP, CopyNumberVariation, Genetics, Visualization
NeedsCompilation: no
Packaged: 2016-05-04 04:55:17 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'copynumber' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'copynumber'
    finding HTML links ... done
    SNPdata                                 html  
    aspcf                                   html  
    callAberrations                         html  
    getGRangesFormat                        html  
    imputeMissing                           html  
    interpolate.pcf                         html  
    lymphoma                                html  
    micma                                   html  
    multipcf                                html  
    pcf                                     html  
    pcfPlain                                html  
    plotAberration                          html  
    plotAllele                              html  
    plotChrom                               html  
    plotCircle                              html  
    plotFreq                                html  
    plotGamma                               html  
    plotGenome                              html  
    plotHeatmap                             html  
    plotSample                              html  
    selectSegments                          html  
    subsetData                              html  
    subsetSegments                          html  
    winsorize                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (copynumber)
Making 'packages.html' ... done