coxme

Title: Mixed Effects Cox Models
Priority: optional
Package: coxme
Version: 2.2-5
Depends: survival (>= 2.36.14), methods, bdsmatrix (>= 1.3)
Imports: nlme, Matrix (>= 1.0)
Suggests: mvtnorm, kinship2
LinkingTo: bdsmatrix
LazyData: Yes
LazyLoad: Yes
Authors@R: person(c("Terry", "M."), "Therneau", role=c("aut", "cre"),
email="therneau@mayo.edu")
Description: Cox proportional hazards models containing Gaussian random
effects, also known as frailty models.
License: LGPL-2
URL: http://r-forge.r-project.org
NeedsCompilation: yes
Packaged: 2015-06-15 14:23:58 UTC; therneau
Author: Terry M. Therneau [aut, cre]
Maintainer: Terry M. Therneau <therneau@mayo.edu>
Repository: CRAN
Date/Publication: 2015-06-15 17:08:23

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'coxme' ...
** package 'coxme' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/bdsmatrix/include"   -fpic  -g -O2  -c agfit6b.c -o agfit6b.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/bdsmatrix/include"   -fpic  -g -O2  -c agfit6d.c -o agfit6d.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/bdsmatrix/include"   -fpic  -g -O2  -c bds_dsc.c -o bds_dsc.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/bdsmatrix/include"   -fpic  -g -O2  -c bdsmatrix.c -o bdsmatrix.o
In file included from bdsmatrix.c:8:0:
bdsmatrix_stub.h: In function 'cholesky4':
bdsmatrix_stub.h:29:23: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
     if (fun==NULL) fun= (int(*)) R_GetCCallable("bdsmatrix", "cholesky4");
                       ^
bdsmatrix_stub.h: In function 'cholesky5':
bdsmatrix_stub.h:35:23: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
     if (fun==NULL) fun= (int(*)) R_GetCCallable("bdsmatrix", "cholesky5");
                       ^
bdsmatrix_stub.h: In function 'dmatrix':
bdsmatrix_stub.h:67:23: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
     if (fun==NULL) fun= (double **(*)) R_GetCCallable("bdsmatrix", "dmatrix");
                       ^
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/bdsmatrix/include"   -fpic  -g -O2  -c coxfit6a.c -o coxfit6a.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/bdsmatrix/include"   -fpic  -g -O2  -c coxfit6b.c -o coxfit6b.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/bdsmatrix/include"   -fpic  -g -O2  -c coxfit6c.c -o coxfit6c.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/bdsmatrix/include"   -fpic  -g -O2  -c coxfit6d.c -o coxfit6d.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o coxme.so agfit6b.o agfit6d.o bds_dsc.o bdsmatrix.o coxfit6a.o coxfit6b.o coxfit6c.o coxfit6d.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/coxme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'coxme'
    finding HTML links ... done
    VarCorr                                 html  
    anova.coxme                             html  
    coxme                                   html  
    coxme.control                           html  
    coxme.object                            html  
    coxmeFull                               html  
    coxmeMlist                              html  
    eortc                                   html  
    expand.nested                           html  
    fixed.effects                           html  
    fixef.coxme                             html  
    fixef.lmekin                            html  
    lmekin                                  html  
    lmekin.control                          html  
    lmekin.object                           html  
    logLik.coxme                            html  
    predict.coxme                           html  
    print.coxme                             html  
    print.lmekin                            html  
    ranef                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (coxme)
Making 'packages.html' ... done