customProDB

Package: customProDB
Type: Package
Title: Generate customized protein database from NGS data, with a focus
on RNA-Seq data, for proteomics search.
Version: 1.12.0
Date: 2015-05-29
Author: xiaojing wang
Maintainer: xiaojing wang <xiaojing.wang@vanderbilt.edu>
Description: Generate customized protein sequence database from RNA-Seq
data for proteomics search
License: Artistic-2.0
Depends: R (>= 3.0.1), IRanges, AnnotationDbi, biomaRt
Imports: S4Vectors (>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges,
Rsamtools (>= 1.10.2), GenomicAlignments, Biostrings (>=
2.26.3), GenomicFeatures (>= 1.17.13), biomaRt (>= 2.17.1),
stringr, RCurl, plyr, VariantAnnotation (>= 1.13.44),
rtracklayer, RSQLite, AnnotationDbi
Suggests: BSgenome.Hsapiens.UCSC.hg19
LazyLoad: yes
biocViews: MassSpectrometry, Proteomics, SNP, RNASeq, Software,
Transcription, AlternativeSplicing
NeedsCompilation: no
Packaged: 2016-05-04 05:01:52 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'customProDB' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'customProDB'
    finding HTML links ... done
    Bed2Range                               html  
    InputVcf                                html  
    JunctionType                            html  
    Multiple_VCF                            html  
    OutputNovelJun                          html  
    OutputVarproseq                         html  
    OutputVarproseq_single                  html  
    Outputaberrant                          html  
    Outputproseq                            html  
    OutputsharedPro                         html  
    Positionincoding                        html  
    PrepareAnnotationEnsembl                html  
    PrepareAnnotationRefseq                 html  
    SharedJunc                              html  
    Varlocation                             html  
    aaVariation                             html  
    calculateRPKM                           html  
    easyRun                                 html  
    easyRun_mul                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (customProDB)
Making 'packages.html' ... done