ddalpha

Package: ddalpha
Type: Package
Title: Depth-Based Classification and Calculation of Data Depth
Version: 1.1.3.1
Date: 2015-07-24
Authors@R: c(person("Oleksii", "Pokotylo", role=c("aut", "cre"),
email = "alexey.pokotylo@gmail.com"),
person("Pavlo", "Mozharovskyi", role=c("aut"),
email = "mozharovskyi@statistik.uni-koeln.de"),
person("Rainer", "Dyckerhoff", role=c("aut"),
email = "rainer.dyckerhoff@statistik.uni-koeln.de"))
SystemRequirements: C++11
Depends: stats, utils, graphics, grDevices, MASS, class, robustbase
Imports: Rcpp (>= 0.11.0)
LinkingTo: BH, Rcpp
Description: Contains procedures for depth-based supervised learning, which are entirely non-parametric, in particular the DDalpha-procedure (Lange, Mosler and Mozharovskyi, 2014). The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included.
License: GPL-2
NeedsCompilation: yes
Packaged: 2015-07-24 15:35:40 UTC; Alexey
Author: Oleksii Pokotylo [aut, cre],
Pavlo Mozharovskyi [aut],
Rainer Dyckerhoff [aut]
Maintainer: Oleksii Pokotylo <alexey.pokotylo@gmail.com>
Repository: CRAN
Date/Publication: 2015-07-24 21:32:25

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ddalpha' ...
** package 'ddalpha' successfully unpacked and MD5 sums checked
** libs
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c AlphaProcedure.cpp -o AlphaProcedure.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c Common.cpp -o Common.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c HD.cpp -o HD.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c Knn.cpp -o Knn.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c OjaDepth.cpp -o OjaDepth.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c Polynomial.cpp -o Polynomial.o
In file included from /home/ddbj/local/lib64/R/include/R.h:69:0,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/Rcpp/r/headers.h:52,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/RcppCommon.h:29,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/Rcpp.h:27,
                 from Polynomial.cpp:184:
/home/ddbj/local/lib64/R/include/R_ext/Constants.h:32:0: warning: "PI" redefined
 #define PI             M_PI
 ^
In file included from stdafx.h:29:0,
                 from Polynomial.cpp:14:
DataStructures.h:13:0: note: this is the location of the previous definition
 #define PI (PI2*2)
 ^
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c PotentialDepth.cpp -o PotentialDepth.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c ProjectionDepth.cpp -o ProjectionDepth.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c SimplicialDepth.cpp -o SimplicialDepth.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c TukeyDepth.cpp -o TukeyDepth.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c ZonoidDepth.cpp -o ZonoidDepth.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c ddalpha.cpp -o ddalpha.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c stdafx.cpp -o stdafx.o
g++ -std=c++11 -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ddalpha.so AlphaProcedure.o Common.o HD.o Knn.o OjaDepth.o Polynomial.o PotentialDepth.o ProjectionDepth.o RcppExports.o SimplicialDepth.o TukeyDepth.o ZonoidDepth.o ddalpha.o stdafx.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ddalpha/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ddalpha'
    finding HTML links ... done
    compclassf.classify                     html  
    compclassf.train                        html  
    dataf.                                  html  
    dataf.geneexp                           html  
    dataf.growth                            html  
    dataf.medflies                          html  
    dataf.sim.1.CFF07                       html  
    dataf.sim.2.CFF07                       html  
    dataf.tecator                           html  
    ddalpha-package                         html  
    ddalpha.classify                        html  
    ddalpha.getErrorRateCV                  html  
    ddalpha.getErrorRatePart                html  
    ddalpha.test                            html  
    ddalpha.train                           html  
    finding level-2 HTML links ... done

    ddalphaf.classify                       html  
    ddalphaf.train                          html  
    depth.                                  html  
    depth.Mahalanobis                       html  
    depth.contours                          html  
    depth.contours.ddalpha                  html  
    depth.graph                             html  
    depth.halfspace                         html  
    depth.potential                         html  
    depth.projection                        html  
    depth.simplicial                        html  
    depth.simplicialVolume                  html  
    depth.space.                            html  
    depth.space.Mahalanobis                 html  
    depth.space.halfspace                   html  
    depth.space.potential                   html  
    depth.space.projection                  html  
    depth.space.simplicial                  html  
    depth.space.simplicialVolume            html  
    depth.space.spatial                     html  
    depth.space.zonoid                      html  
    depth.spatial                           html  
    depth.zonoid                            html  
    draw.ddplot                             html  
    getdata                                 html  
    is.in.convex                            html  
    nlm_optimize_r                          html  
    plotf                                   html  
    resetPar                                html  
** building package indices
** testing if installed package can be loaded
* DONE (ddalpha)
Making 'packages.html' ... done