dendsort

Package: dendsort
Type: Package
Title: Modular Leaf Ordering Methods for Dendrogram Nodes
Version: 0.3.3
Date: 2015-12-14
Author: Ryo Sakai
Maintainer: Ryo Sakai <ryo@vda-lab.be>
Description: An implementation of functions to optimize ordering of nodes in
a dendrogram, without affecting the meaning of the dendrogram. A dendrogram can
be sorted based on the average distance of subtrees, or based on the smallest
distance value. These sorting methods improve readability and interpretability
of tree structure, especially for tasks such as comparison of different distance
measures or linkage types and identification of tight clusters and outliers. As
a result, it also introduces more meaningful reordering for a coupled heatmap
visualization.
License: GPL-2 | GPL-3
URL: https://bitbucket.org/vda-lab/dendsort/,
http://f1000research.com/articles/3-177/v1
Suggests: knitr, RColorBrewer, gplots, heatmap.plus, seriation, gapmap
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-12-14 09:55:50 UTC; ryosakai
Repository: CRAN
Date/Publication: 2015-12-14 12:39:17

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'dendsort' ...
** package 'dendsort' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'dendsort'
    finding HTML links ... done
    cal_length                              html  
    cal_node_limit                          html  
    cal_total_length                        html  
    dendsort-package                        html  
    dendsort                                html  
    sample_tcga                             html  
    sort_average                            html  
    sort_average_r                          html  
    sort_smallest                           html  
    sort_smallest_r                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (dendsort)
Making 'packages.html' ... done