doppelgangR

Package: doppelgangR
Maintainer: Levi Waldron <lwaldron.research@gmail.com>
Depends: R (>= 3.3), Biobase, BiocParallel
Suggests: BiocStyle, knitr, rmarkdown, curatedOvarianData, ROCR, pROC,
RUnit, simulatorZ, proxy
Imports: sva, impute, digest, mnormt, methods, grDevices, graphics,
stats, utils
Author: Levi Waldron, Markus Riester, Marcel Ramos
Version: 1.0.2
Date: 2016-03-14
License: GPL (>=2.0)
Title: Identify likely duplicate samples from genomic or meta-data
Description: The main function is doppelgangR(), which takes as minimal
input a list of ExpressionSet object, and searches all list
pairs for duplicated samples. The search is based on the
genomic data (exprs(eset)), phenotype/clinical data
(pData(eset)), and "smoking guns" - supposedly unique
identifiers found in pData(eset).
URL: https://github.com/lwaldron/doppelgangR
BugReports: https://github.com/lwaldron/doppelgangR/issues
VignetteBuilder: knitr
biocViews: RNASeq, Microarray, GeneExpression, QualityControl
NeedsCompilation: no
Packaged: 2016-05-16 06:02:03 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'doppelgangR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'doppelgangR'
    finding HTML links ... done
    DoppelGang-class                        html  
    corFinder                               html  
    doppelgangR-package                     html  
    doppelgangR                             html  
    dst                                     html  
    mst.mle                                 html  
    outlierFinder                           html  
    phenoDist                               html  
    phenoFinder                             html  
    plot-methods                            html  
    print-methods                           html  
    show-methods                            html  
    smokingGunFinder                        html  
    summary-methods                         html  
    vectorHammingDist                       html  
    vectorWeightedDist                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (doppelgangR)
Making 'packages.html' ... done