dupRadar

Package: dupRadar
Type: Package
Title: Assessment of duplication rates in RNA-Seq datasets
Version: 1.2.2
Date: 2015-09-26
Author: Sergi Sayols <sergisayolspuig@gmail.com>, Holger Klein
<holger.klein@gmail.com>
Maintainer: Sergi Sayols <sergisayolspuig@gmail.com>, Holger Klein
<holger.klein@gmail.com>
Description: Duplication rate quality control for RNA-Seq datasets.
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, AnnotationHub
Depends: R (>= 3.2.0)
Imports: Rsubread (>= 1.14.1)
LazyData: true
License: GPL-3
biocViews: Technology, Sequencing, RNASeq, QualityControl
NeedsCompilation: no
Packaged: 2016-05-16 05:40:49 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'dupRadar' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'dupRadar'
    finding HTML links ... done
    analyzeDuprates                         html  
    bamutilMarkDuplicates                   html  
    cumulativeDuprateBarplot                html  
    dm                                      html  
    dm.bad                                  html  
    dupRadar                                html  
    dupRadar_examples                       html  
    duprateExpBoxplot                       html  
    duprateExpDensPlot                      html  
    duprateExpFit                           html  
    duprateExpIdentify                      html  
    duprateExpPlot                          html  
    expressionHist                          html  
    getBinDuplication                       html  
    getBinRpkMean                           html  
    getDupMatBin                            html  
    getDupMatStats                          html  
    getDynamicRange                         html  
    getRpkBinReadCountFraction              html  
    getRpkCumulativeReadCountFraction       html  
    markDuplicates                          html  
    picardMarkDuplicates                    html  
    readcountExpBoxplot                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (dupRadar)
Making 'packages.html' ... done